BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0704600 Os02g0704600|J065163N21
         (456 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0704600  Conserved hypothetical protein                      771   0.0  

>Os02g0704600 Conserved hypothetical protein
          Length = 456

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/456 (83%), Positives = 383/456 (83%)

Query: 1   MPTITHYVLDPLLETGSATQXXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXQTASAT 60
           MPTITHYVLDPLLETGSATQ                       I          QTASAT
Sbjct: 1   MPTITHYVLDPLLETGSATQSQKAASKPPPAPPLPQEKAAEKPIPVPVAPVRRAQTASAT 60

Query: 61  LYATPESTSLPDSPSSFPGTWSPYLINHKRRGPCLVKTLSQGDVGSDGSQQPTLSVTLPP 120
           LYATPESTSLPDSPSSFPGTWSPYLINHKRRGPCLVKTLSQGDVGSDGSQQPTLSVTLPP
Sbjct: 61  LYATPESTSLPDSPSSFPGTWSPYLINHKRRGPCLVKTLSQGDVGSDGSQQPTLSVTLPP 120

Query: 121 LPKRXXXXXXXXXXXXXXXXXNGVLEGDSGVVETLDWQNGMLQKGKGTVSGEYGHDQAEF 180
           LPKR                 NGVLEGDSGVVETLDWQNGMLQKGKGTVSGEYGHDQAEF
Sbjct: 121 LPKRSQSFEAQEPEFEFQQASNGVLEGDSGVVETLDWQNGMLQKGKGTVSGEYGHDQAEF 180

Query: 181 EFQHGNPDATVRPVNVGRPANGGTPRKINNDAFFELQDSLSMASNSEAEDAGGHERWWKP 240
           EFQHGNPDATVRPVNVGRPANGGTPRKINNDAFFELQDSLSMASNSEAEDAGGHERWWKP
Sbjct: 181 EFQHGNPDATVRPVNVGRPANGGTPRKINNDAFFELQDSLSMASNSEAEDAGGHERWWKP 240

Query: 241 SSPLGTSVGTPGAEFYDAFEEISSDGATRSSQCMDDDLREMRLSLLMEIERRKQAEEALE 300
           SSPLGTSVGTPGAEFYDAFEEISSDGATRSSQCMDDDLREMRLSLLMEIERRKQAEEALE
Sbjct: 241 SSPLGTSVGTPGAEFYDAFEEISSDGATRSSQCMDDDLREMRLSLLMEIERRKQAEEALE 300

Query: 301 NWQKEWKKLSDHLSLIALTLPPPSLAEDTDDSSMDPGAELCQQITVSQLVXXXXXXXXXX 360
           NWQKEWKKLSDHLSLIALTLPPPSLAEDTDDSSMDPGAELCQQITVSQLV          
Sbjct: 301 NWQKEWKKLSDHLSLIALTLPPPSLAEDTDDSSMDPGAELCQQITVSQLVAAAIARGFAR 360

Query: 361 XEVETDMETKIAAKNFEIARLSDRVQYYEAANREMSQRNQEAIEMSXXXXXXXXXXXXWF 420
            EVETDMETKIAAKNFEIARLSDRVQYYEAANREMSQRNQEAIEMS            WF
Sbjct: 361 AEVETDMETKIAAKNFEIARLSDRVQYYEAANREMSQRNQEAIEMSRQQRNIRKKRQKWF 420

Query: 421 WGSVGLAVTLGTAAIAWSYLPAAQPQASQDSNTNSD 456
           WGSVGLAVTLGTAAIAWSYLPAAQPQASQDSNTNSD
Sbjct: 421 WGSVGLAVTLGTAAIAWSYLPAAQPQASQDSNTNSD 456



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.127    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,260,162
Number of extensions: 554749
Number of successful extensions: 1279
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 352
Effective length of database: 11,605,545
Effective search space: 4085151840
Effective search space used: 4085151840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)