Os02g0704500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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Os02g0704500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.88 | 0.3 | 11.7 | -0.563 | 0.178 | 1.25 | -0.995 | 0.027 | -0.49 | 17.5 | 19.04 | 10 | -- | -- |
| 40.87 | 0.298 | 11.7 | -0.567 | 0.179 | 1.25 | -0.993 | -- | -0.491 | 17.5 | 19.08 | 8 | -- | -- |
| 42.46 | 0.303 | 11.7 | -0.581 | 0.217 | 1.16 | -- | -0.323 | -0.486 | 16 | 19.26 | 3 | -- | -- |
| 42.57 | 0.304 | 11.7 | -0.532 | 0.235 | 1.11 | -- | -- | -0.472 | 15.6 | 19 | 3 | -- | -- |
| 44.43 | 0.31 | 11.7 | -0.651 | -- | 1.31 | -- | -0.527 | -0.532 | -- | 19.57 | 12 | -- | -- |
| 60.37 | 0.364 | 11.7 | -0.289 | 0.629 | -- | -0.129 | -- | -0.281 | 14.9 | -- | -- | -- | -- |
| 60.43 | 0.364 | 11.7 | -0.292 | 0.627 | -- | -- | -- | -0.282 | 14.8 | -- | -- | -- | -- |
| 44.7 | 0.311 | 11.7 | -0.583 | -- | 1.32 | -- | -- | -0.512 | -- | 19.21 | 12 | -- | -- |
| 49.35 | 0.329 | 11.7 | -- | 0.308 | 0.926 | -- | -- | -0.383 | 15.3 | 19.6 | 5 | -- | -- |
| 83.22 | 0.426 | 11.7 | -0.319 | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
| 62.68 | 0.37 | 11.7 | -- | 0.633 | -- | -- | -- | -0.249 | 14.8 | -- | -- | -- | -- |
| 52.96 | 0.34 | 11.7 | -- | -- | 1.17 | -- | -- | -0.425 | -- | 20.1 | 11 | -- | -- |
| 85.91 | 0.433 | 11.7 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.69 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 40.79 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 3 | 40.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 5 | 40.97 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 6 | 41.03 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 7 | 41.04 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 9 | 41.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 11 | 41.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 12 | 41.16 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 17 | 41.41 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 20 | 41.58 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 21 | 41.59 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 22 | 41.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 26 | 41.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 31 | 41.86 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 32 | 41.87 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 33 | 41.91 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 36 | 41.98 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 37 | 41.98 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 42 | 42.11 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 43 | 42.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 52 | 42.27 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 54 | 42.36 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 56 | 42.39 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 63 | 42.48 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 70 | 42.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 78 | 42.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 79 | 42.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 82 | 42.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 83 | 42.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 87 | 42.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 89 | 42.80 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 100 | 42.98 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 102 | 43.03 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 107 | 43.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 109 | 43.11 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 115 | 43.17 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 120 | 43.22 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 130 | 43.35 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 138 | 43.42 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 141 | 43.45 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 145 | 43.52 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 147 | 43.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 173 | 43.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 176 | 43.76 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 186 | 43.82 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 192 | 43.87 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 212 | 44.00 | temperature | 25.0 | 270 | > th | dose independent | rect. | 11 | 22 |
| 218 | 44.02 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 220 | 44.03 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 236 | 44.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 238 | 44.09 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 245 | 44.11 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 247 | 44.11 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 251 | 44.12 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 260 | 44.15 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 270 | 44.18 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 19 |
| 287 | 44.22 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 16 |
| 292 | 44.23 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 388 | 44.32 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 399 | 44.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 408 | 44.35 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 413 | 44.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 479 | 44.41 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 504 | 44.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 512 | 44.44 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 541 | 44.50 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 553 | 44.53 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 6 |
| 554 | 44.53 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 6 |
| 557 | 44.54 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 6 |
| 574 | 44.56 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 579 | 44.57 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 600 | 44.60 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 611 | 44.62 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 626 | 44.65 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 653 | 44.69 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 700 | 44.77 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 756 | 44.88 | wind | 5.0 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 778 | 44.91 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 798 | 44.92 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 807 | 44.93 | temperature | 25.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 821 | 44.95 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 857 | 45.00 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 873 | 45.03 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 891 | 45.06 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 931 | 45.10 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 936 | 45.11 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 937 | 45.11 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 960 | 45.12 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 978 | 45.14 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 987 | 45.15 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 16 |