BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0704500 Os02g0704500|AK059507
(275 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G66450.1 | chr5:26534801-26535951 FORWARD LENGTH=287 191 5e-49
AT3G50920.1 | chr3:18922403-18923533 REVERSE LENGTH=280 172 1e-43
>AT5G66450.1 | chr5:26534801-26535951 FORWARD LENGTH=287
Length = 286
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 138/227 (60%)
Query: 49 CMAEMARVGTGSSWEEELGVPEESDAILXXXXXXXQRRQATRWELVEARLNQTSKWLVAG 108
MA++ + E+ E+ I + + +EA N+ SKW+VA
Sbjct: 59 SMADLVKTNARRDGEDRFQALEQEAFISNSSSELQNELVSDAGDGIEAIANRLSKWIVAA 118
Query: 109 CYTSAAIWKHDALIMWAMIGAVLNSMFSNLLKRIFNHERPVSALRSDPGMPSSHAQSFLY 168
+ S + +HD +WA+IG+V NS+ S LKRI N ERPV+ LRSDPGMPSSHAQS +
Sbjct: 119 LFGSVLLLRHDGAALWAVIGSVSNSVLSVALKRILNQERPVATLRSDPGMPSSHAQSISF 178
Query: 169 SAVFLILSLFYWLGRTYLSVILGVAILAMCCYLSWLRVSQHLHTLNQVLVGAIVGSAFGA 228
+VF + S+ WLG LS+ L ILA+ Y +WLRVSQ LHT +QV+VGAIVGS +
Sbjct: 179 ISVFSVFSVMEWLGTNVLSLFLSGFILALGSYFTWLRVSQKLHTTSQVVVGAIVGSVYST 238
Query: 229 MWFALFNLLVQEAFASSVPVQIAVTIGTAILCIGFVIHVVRHWFKDE 275
+W+ +N LV EAF S+ VQIA+ + A +GF ++V+ +WFKD+
Sbjct: 239 LWYVTWNSLVLEAFTSTFSVQIALFLVAAASALGFAVYVLLNWFKDD 285
>AT3G50920.1 | chr3:18922403-18923533 REVERSE LENGTH=280
Length = 279
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 141/223 (63%), Gaps = 4/223 (1%)
Query: 54 ARVGTGSS-WEEELGVPEESDAILXXXXXXXQRRQATRWELVEARLNQTSKWLVAGCYTS 112
+RVG+ S+ E+ G E+ I R+ +EA +N+ SKW+V+ + S
Sbjct: 59 SRVGSRSNDGNEQFGALEQESFI---NNSSEIRKDLVTGGGIEAIVNRLSKWVVSVLFGS 115
Query: 113 AAIWKHDALIMWAMIGAVLNSMFSNLLKRIFNHERPVSALRSDPGMPSSHAQSFLYSAVF 172
+ +HD +WA+IG++ NS S +LKRI N ERP + LRSDPGMPSSHAQS + +VF
Sbjct: 116 IILLRHDGAALWAVIGSISNSALSVVLKRILNQERPTTTLRSDPGMPSSHAQSISFISVF 175
Query: 173 LILSLFYWLGRTYLSVILGVAILAMCCYLSWLRVSQHLHTLNQVLVGAIVGSAFGAMWFA 232
+LS+ WLG +S+ L ILA+ Y LRVSQ LHT +QV+VGAIVGS F +W+
Sbjct: 176 AVLSVMEWLGTNGVSLFLSGLILALGSYFIRLRVSQKLHTSSQVVVGAIVGSLFCILWYT 235
Query: 233 LFNLLVQEAFASSVPVQIAVTIGTAILCIGFVIHVVRHWFKDE 275
++N L++EAF +S+ VQI+V + A + F +VV +WFKDE
Sbjct: 236 MWNSLLREAFEASLLVQISVFLFAATFALAFAAYVVLNWFKDE 278
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,666,255
Number of extensions: 162671
Number of successful extensions: 513
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)