Os02g0700000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PWWP domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0700000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : PWWP domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.61 | 0.28 | 8.43 | 1.49 | 1.07 | 0.325 | -0.489 | 2.02 | 0.154 | 6.75 | 19.86 | 4476 | -- | -- |
| 39.99 | 0.297 | 8.51 | 1.19 | 1.06 | -0.136 | -0.446 | -- | 0.0895 | 6.85 | 19.86 | 4476 | -- | -- |
| 35.8 | 0.279 | 8.43 | 1.44 | 1.07 | 0.426 | -- | 2.17 | 0.147 | 6.8 | 19.3 | 4603 | -- | -- |
| 39.05 | 0.291 | 8.51 | 1.4 | 1.05 | -0.334 | -- | -- | 0.124 | 6.8 | 13.3 | 16200 | -- | -- |
| 94.8 | 0.453 | 8.44 | 1.41 | -- | 0.534 | -- | 2.31 | 0.148 | -- | 19.1 | 4288 | -- | -- |
| 40.68 | 0.299 | 8.51 | 1.16 | 1.06 | -- | -0.443 | -- | 0.0665 | 6.74 | -- | -- | -- | -- |
| 41.16 | 0.3 | 8.51 | 1.15 | 1.06 | -- | -- | -- | 0.0681 | 6.81 | -- | -- | -- | -- |
| 97.78 | 0.461 | 8.52 | 1.46 | -- | -0.385 | -- | -- | 0.155 | -- | 13.8 | 42328 | -- | -- |
| 47.32 | 0.32 | 8.6 | -- | 1.05 | 0.793 | -- | -- | -0.319 | 6.89 | 22 | 47520 | -- | -- |
| 100.07 | 0.467 | 8.53 | 1.18 | -- | -- | -- | -- | 0.0886 | -- | -- | -- | -- | -- |
| 76.26 | 0.408 | 8.54 | -- | 1.07 | -- | -- | -- | -0.0604 | 6.74 | -- | -- | -- | -- |
| 106.35 | 0.48 | 8.63 | -- | -- | 0.806 | -- | -- | -0.323 | -- | 22.07 | 47520 | -- | -- |
| 136.64 | 0.546 | 8.56 | -- | -- | -- | -- | -- | -0.042 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.13 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 19 |
| 2 | 35.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 17 |
| 6 | 35.40 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 18 |
| 10 | 35.44 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 12 | 35.48 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 18 |
| 13 | 35.49 | wind | 3 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 16 | 35.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 18 | 35.53 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 20 |
| 19 | 35.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 21 | 35.55 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 20 |
| 26 | 35.57 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 27 | 35.57 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 30 | 35.58 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 35 | 35.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 36 | 35.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 37 | 35.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 41 | 35.64 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 43 | 35.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 21 |
| 52 | 35.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 21 |
| 56 | 35.66 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 58 | 35.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 68 | 35.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 86 | 35.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 89 | 35.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 10 | 22 |
| 94 | 35.68 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 95 | 35.68 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 110 | 35.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 21 |
| 118 | 35.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 121 | 35.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 122 | 35.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 125 | 35.69 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 126 | 35.69 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 139 | 35.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 21 |
| 160 | 35.70 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 186 | 35.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 191 | 35.71 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 234 | 35.73 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 235 | 35.73 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 256 | 35.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 296 | 35.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 319 | 35.76 | wind | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 345 | 35.77 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 15 |
| 347 | 35.78 | temperature | 20 | 4320 | > th | dose independent | sin | 5 | NA |
| 348 | 35.78 | temperature | 20 | 4320 | < th | dose independent | sin | 5 | NA |
| 350 | 35.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 10 |
| 371 | 35.79 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 373 | 35.79 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 383 | 35.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 384 | 35.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 430 | 35.80 | wind | 3 | 43200 | < th | dose dependent | sin | 23 | NA |
| 431 | 35.80 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 513 | 35.83 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 589 | 35.86 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 619 | 35.88 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 721 | 35.92 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 728 | 35.92 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 743 | 35.93 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 745 | 35.93 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 779 | 35.94 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 780 | 35.94 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 816 | 35.95 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 820 | 35.95 | wind | 3 | 43200 | < th | dose dependent | no | NA | NA |
| 829 | 35.95 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 860 | 35.96 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 903 | 35.98 | wind | 3 | 43200 | < th | dose dependent | sin | 14 | NA |
| 920 | 35.98 | wind | 3 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 945 | 35.99 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 8 | NA |
| 949 | 35.99 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 965 | 35.99 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 24 | 14 |