BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0700000 Os02g0700000|AK100709
         (827 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0700000  PWWP domain containing protein                     1547   0.0  
Os01g0558500  PWWP domain containing protein                      137   4e-32

>Os02g0700000 PWWP domain containing protein
          Length = 827

 Score = 1547 bits (4005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/806 (93%), Positives = 750/806 (93%)

Query: 22  TSPGTIVWVRRRNGSWWPGRILGPDELPPSQIMSPRSGTPVKLLGREDASVDWYNIEKSK 81
           TSPGTIVWVRRRNGSWWPGRILGPDELPPSQIMSPRSGTPVKLLGREDASVDWYNIEKSK
Sbjct: 22  TSPGTIVWVRRRNGSWWPGRILGPDELPPSQIMSPRSGTPVKLLGREDASVDWYNIEKSK 81

Query: 82  RVKAFRCGEFDACIEKAEATEGTSVKKREKYARREDAIXXXXXXXXXXXXXXXQTQGSRP 141
           RVKAFRCGEFDACIEKAEATEGTSVKKREKYARREDAI               QTQGSRP
Sbjct: 82  RVKAFRCGEFDACIEKAEATEGTSVKKREKYARREDAILHALELEKKLLASKHQTQGSRP 141

Query: 142 ANVSVCSKHNKDLGSTRYXXXXXXXXXGITASSDIKKEAEQYVLHAGSKRNFQDSPTRGI 201
           ANVSVCSKHNKDLGSTRY         GITASSDIKKEAEQYVLHAGSKRNFQDSPTRGI
Sbjct: 142 ANVSVCSKHNKDLGSTRYKSKKSKKRKGITASSDIKKEAEQYVLHAGSKRNFQDSPTRGI 201

Query: 202 SDNLFGNHLGDISHVRHIQAGENLDSKEKITTAEKIRSDGSDFDESIEKCDRRQPLVQIL 261
           SDNLFGNHLGDISHVRHIQAGENLDSKEKITTAEKIRSDGSDFDESIEKCDRRQPLVQIL
Sbjct: 202 SDNLFGNHLGDISHVRHIQAGENLDSKEKITTAEKIRSDGSDFDESIEKCDRRQPLVQIL 261

Query: 262 HSSPKLPHQSQHNDGYGDVLTQGEMDRSPANYRAKRSRYVFLPTDSGETHSHSDLPSVQV 321
           HSSPKLPHQSQHNDGYGDVLTQGEMDRSPANYRAKRSRYVFLPTDSGETHSHSDLPSVQV
Sbjct: 262 HSSPKLPHQSQHNDGYGDVLTQGEMDRSPANYRAKRSRYVFLPTDSGETHSHSDLPSVQV 321

Query: 322 ASTGGDFETESYLHHPAFSEEQTSSDLVEKHIYXXXXXXXXXXXXXDDAELLQCSDLILH 381
           ASTGGDFETESYLHHPAFSEEQTSSDLVEKHIY             DDAELLQCSDLILH
Sbjct: 322 ASTGGDFETESYLHHPAFSEEQTSSDLVEKHIYESSERECSESETEDDAELLQCSDLILH 381

Query: 382 PASHAHDPYFLPASDKFRHANIDADADELTYSSYMCQVNESEEDGSSELGVSQWHMKGKR 441
           PASHAHDPYFLPASDKFRHANIDADADELTYSSYMCQVNESEEDGSSELGVSQWHMKGKR
Sbjct: 382 PASHAHDPYFLPASDKFRHANIDADADELTYSSYMCQVNESEEDGSSELGVSQWHMKGKR 441

Query: 442 NSRNAPKRSDMADGNPWLDKSDGFMEGSPYKINGRNPREGSMQIPNQQLLGQNFYQNEEV 501
           NSRNAPKRSDMADGNPWLDKSDGFMEGSPYKINGRNPREGSMQIPNQQLLGQNFYQNEEV
Sbjct: 442 NSRNAPKRSDMADGNPWLDKSDGFMEGSPYKINGRNPREGSMQIPNQQLLGQNFYQNEEV 501

Query: 502 NYDSEETDFFEDTGHSEVNLYHGRTYSSCLKATRDFSRSYSYFNDYGNDSSKVSPLNRDS 561
           NYDSEETDFFEDTGHSEVNLYHGRTYSSCLKATRDFSRSYSYFNDYGNDSSKVSPLNRDS
Sbjct: 502 NYDSEETDFFEDTGHSEVNLYHGRTYSSCLKATRDFSRSYSYFNDYGNDSSKVSPLNRDS 561

Query: 562 DKIFHFDRNAYWSGPSFYQKYSSRLRGRGPMLFDVDLKVQASYQGEHVPLVSLMSRLNGK 621
           DKIFHFDRNAYWSGPSFYQKYSSRLRGRGPMLFDVDLKVQASYQGEHVPLVSLMSRLNGK
Sbjct: 562 DKIFHFDRNAYWSGPSFYQKYSSRLRGRGPMLFDVDLKVQASYQGEHVPLVSLMSRLNGK 621

Query: 622 AIVGHPVQIEILEDGSTDHLVFCGDVSLEGRTGGQPAWCTGRRTAMQRIPRSNPSGALDC 681
           AIVGHPVQIEILEDGSTDHLVFCGDVSLEGRTGGQPAWCTGRRTAMQRIPRSNPSGALDC
Sbjct: 622 AIVGHPVQIEILEDGSTDHLVFCGDVSLEGRTGGQPAWCTGRRTAMQRIPRSNPSGALDC 681

Query: 682 DDEGTLAYPDWEMKPDFRKYSNSDFRKYSNSNHQVKVDKKSISNVRRPXXXXXXXXXXXX 741
           DDEGTLAYPDWEMKPDFRKYSNSDFRKYSNSNHQVKVDKKSISNVRRP            
Sbjct: 682 DDEGTLAYPDWEMKPDFRKYSNSDFRKYSNSNHQVKVDKKSISNVRRPSASKSQKKQSKK 741

Query: 742 XXXXXXXVRTLSSISTGKKHHGVGGQAKAHKQSGIFGGLIKPGGIPLVTCVPAKVAFTRI 801
                  VRTLSSISTGKKHHGVGGQAKAHKQSGIFGGLIKPGGIPLVTCVPAKVAFTRI
Sbjct: 742 ASLSSQKVRTLSSISTGKKHHGVGGQAKAHKQSGIFGGLIKPGGIPLVTCVPAKVAFTRI 801

Query: 802 LEAVGRPPLAVAHRVRMASPALRDPS 827
           LEAVGRPPLAVAHRVRMASPALRDPS
Sbjct: 802 LEAVGRPPLAVAHRVRMASPALRDPS 827



>Os01g0558500 PWWP domain containing protein
          Length = 774

 Score =  137 bits (344), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 75/98 (76%), Gaps = 3/98 (3%)

Query: 25  GTIVWVRRRNGSWWPGRILGPDELPPSQIMSPRS-GTPVKLLGREDASVDWYNIEKSKRV 83
           G +VWVRRRNGSWWPG+IL  DELP + ++ PRS GTP+KLLGR D S+DWYN+EKSKRV
Sbjct: 25  GALVWVRRRNGSWWPGQILSADELPENCVVPPRSSGTPIKLLGRPDGSIDWYNLEKSKRV 84

Query: 84  KAFRCGEFDACIE--KAEATEGTSVKKREKYARREDAI 119
           K FRCGE++ CIE  KA+A +        KY RREDAI
Sbjct: 85  KPFRCGEYEECIEKAKAQARQHKRAYNEGKYVRREDAI 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,543,829
Number of extensions: 1268101
Number of successful extensions: 1972
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1967
Number of HSP's successfully gapped: 2
Length of query: 827
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 718
Effective length of database: 11,344,475
Effective search space: 8145333050
Effective search space used: 8145333050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)