BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0700000 Os02g0700000|AK100709
(827 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03140.1 | chr3:724348-727093 FORWARD LENGTH=770 166 4e-41
AT3G21295.1 | chr3:7489635-7492296 FORWARD LENGTH=646 149 9e-36
AT1G51745.1 | chr1:19192055-19194375 FORWARD LENGTH=564 131 2e-30
>AT3G03140.1 | chr3:724348-727093 FORWARD LENGTH=770
Length = 769
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 84/95 (88%)
Query: 25 GTIVWVRRRNGSWWPGRILGPDELPPSQIMSPRSGTPVKLLGREDASVDWYNIEKSKRVK 84
G+IVWVRRRNGSWWPGRILG ++L + I SPRSGTPVKLLGREDASVDWYN+EKSKRVK
Sbjct: 14 GSIVWVRRRNGSWWPGRILGQEDLDSTHITSPRSGTPVKLLGREDASVDWYNLEKSKRVK 73
Query: 85 AFRCGEFDACIEKAEATEGTSVKKREKYARREDAI 119
FRCG+FD CIE+ E+++ +KKREKYARREDAI
Sbjct: 74 PFRCGDFDECIERVESSQAMIIKKREKYARREDAI 108
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 25/233 (10%)
Query: 593 LFDVDLKVQASYQGEHVPLVSLMSRLNGKAIVGHPVQIEILEDGSTDHLV-----FCGDV 647
L DVDL+V+ SYQ VP+VSLMS+LNG+AI+GHPV++E+L DGS++ + F +
Sbjct: 531 LMDVDLEVRGSYQKGPVPIVSLMSKLNGRAIIGHPVEVEVLADGSSESYIQTIDYFGNET 590
Query: 648 SLEGRTGGQP-AWCTGRRTAMQRIPRSNP-SGALDCDDEGTLAY--PDWEMKPDFRKYSN 703
+ + +T P AW T RR+ R+PR P S +++ DD+ T Y D KP +K
Sbjct: 591 TYQDKTFLLPSAWKTARRSN-SRVPRLQPFSSSVEADDDATYDYSLADQGRKPLVKKLGL 649
Query: 704 SDFRKYSNSNHQVKVDKKSISNVRRPXXXX-------XXXXXXXXXXXXXXXVRTLSSIS 756
F SN V + S + RP R LSS S
Sbjct: 650 GHF-----SNDDNSVRRNSSLRIPRPPAERKQQHQQQQKKLLKNTNATASQKTRALSSFS 704
Query: 757 TGKKHHGVGGQAKAHKQSGIFGGLIKPGGIPLVTCVPAKVAFTRILEAVGRPP 809
+ H+G+ +A + + + PG P V C+P K+ ++R+LE + RPP
Sbjct: 705 GEQGHNGM--KASRDRTHELSNRRVLPGP-PTVACIPVKLVYSRLLEKINRPP 754
>AT3G21295.1 | chr3:7489635-7492296 FORWARD LENGTH=646
Length = 645
Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 70/97 (72%), Positives = 82/97 (84%)
Query: 23 SPGTIVWVRRRNGSWWPGRILGPDELPPSQIMSPRSGTPVKLLGREDASVDWYNIEKSKR 82
S G +VWVRRRNG+WWPGRI+ E+P I+SP+SGTP+KLLGR+DASVDWYN+EKSKR
Sbjct: 15 SVGGLVWVRRRNGAWWPGRIMAHHEVPDGTIVSPKSGTPIKLLGRDDASVDWYNLEKSKR 74
Query: 83 VKAFRCGEFDACIEKAEATEGTSVKKREKYARREDAI 119
VKAFRCGE+DACI A+AT T+ KK KYARREDAI
Sbjct: 75 VKAFRCGEYDACIATAKATASTTGKKAVKYARREDAI 111
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 44/55 (80%)
Query: 588 GRGPMLFDVDLKVQASYQGEHVPLVSLMSRLNGKAIVGHPVQIEILEDGSTDHLV 642
GR L+DV ++V+A+Y+ +VPL+SL S+LNG+AIVGHP +E+LEDGS H+V
Sbjct: 486 GRNSELYDVKIEVKANYKPRNVPLISLRSKLNGEAIVGHPSVVEVLEDGSCGHIV 540
>AT1G51745.1 | chr1:19192055-19194375 FORWARD LENGTH=564
Length = 563
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 75/97 (77%), Gaps = 2/97 (2%)
Query: 23 SPGTIVWVRRRNGSWWPGRILGPDELPPSQIMSPRSGTPVKLLGREDASVDWYNIEKSKR 82
S G +VWVRRRNGSWWPG+ L D++P + ++ P+ GTP+KLLGR+D SVDWY +E SK
Sbjct: 15 SVGRLVWVRRRNGSWWPGQTLVHDQVPDNSLVGPKVGTPIKLLGRDDVSVDWYILENSKT 74
Query: 83 VKAFRCGEFDACIEKAEATEGTSVKKREKYARREDAI 119
VKAFRCGE+D CIEKA+A+ +S K+ K REDAI
Sbjct: 75 VKAFRCGEYDTCIEKAKAS--SSKKRSGKCTLREDAI 109
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 593 LFDVDLKVQASYQGEHVPLVSLMSRLNGKAIVGHPVQIEILEDGSTDHLVF 643
L++V ++V+ASY VPLVS MS L+GKAIVGHP+ +EILE+ ++ +V
Sbjct: 485 LYEVKIEVKASYTKPRVPLVSRMSELSGKAIVGHPLSVEILEEDYSNGMVM 535
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,005,312
Number of extensions: 798914
Number of successful extensions: 1379
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1378
Number of HSP's successfully gapped: 6
Length of query: 827
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 720
Effective length of database: 8,173,057
Effective search space: 5884601040
Effective search space used: 5884601040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 116 (49.3 bits)