Os02g0680600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor (EC 4.6.1.12) (MECPS) (MECDP-synthase).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0680600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor (EC 4.6.1.12) (MECPS) (MECDP-synthase).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.04 | 0.532 | 11.9 | -0.557 | 1.1 | 1.16 | -0.267 | 1.2 | -0.854 | 10.2 | 70 | 6768 | -- | -- |
| 130.04 | 0.531 | 11.9 | -0.623 | 1.1 | 1.22 | -0.371 | -- | -0.873 | 10.2 | 70 | 6809 | -- | -- |
| 128.32 | 0.528 | 11.9 | -0.563 | 1.1 | 1.16 | -- | 1.25 | -0.854 | 10.2 | 69.83 | 6776 | -- | -- |
| 130.36 | 0.532 | 11.8 | -0.619 | 1.09 | 1.26 | -- | -- | -0.816 | 10.3 | 69 | 6825 | -- | -- |
| 190.29 | 0.646 | 11.9 | -0.792 | -- | 0.495 | -- | -0.774 | -0.702 | -- | 70 | 5918 | -- | -- |
| 152.3 | 0.579 | 11.8 | -0.715 | 1 | -- | -0.378 | -- | -0.709 | 10.2 | -- | -- | -- | -- |
| 152.87 | 0.579 | 11.8 | -0.73 | 1 | -- | -- | -- | -0.71 | 10.1 | -- | -- | -- | -- |
| 191.83 | 0.645 | 11.9 | -0.257 | -- | 1.14 | -- | -- | -0.757 | -- | 63 | 20364 | -- | -- |
| 134.88 | 0.541 | 11.8 | -- | 1.04 | 1.28 | -- | -- | -0.821 | 10 | 64.99 | 22312 | -- | -- |
| 213.94 | 0.683 | 11.8 | -0.744 | -- | -- | -- | -- | -0.712 | -- | -- | -- | -- | -- |
| 166.92 | 0.604 | 11.8 | -- | 1.01 | -- | -- | -- | -0.629 | 10.2 | -- | -- | -- | -- |
| 191.57 | 0.645 | 11.8 | -- | -- | 1.31 | -- | -- | -0.554 | -- | 61 | 27391 | -- | -- |
| 228.54 | 0.706 | 11.8 | -- | -- | -- | -- | -- | -0.629 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.69 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 122.22 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 3 | 122.40 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 4 | 122.54 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 15 | 124.62 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 20 | 124.95 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 44 | 125.94 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 16 |
| 47 | 125.99 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 63 | 126.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 93 | 126.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 96 | 126.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 103 | 126.45 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 125 | 126.65 | humidity | 60.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 132 | 126.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 142 | 126.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 147 | 126.72 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 163 | 126.77 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 168 | 126.81 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 205 | 126.97 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 217 | 126.99 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 219 | 127.00 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 271 | 127.08 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 298 | 127.11 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 349 | 127.14 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 408 | 127.33 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 412 | 127.35 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 419 | 127.38 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 17 |
| 422 | 127.39 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 455 | 127.46 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 461 | 127.46 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 23 | 14 |
| 466 | 127.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 477 | 127.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 482 | 127.54 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 505 | 127.60 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 525 | 127.63 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 548 | 127.78 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 21 |
| 596 | 127.91 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 597 | 127.92 | humidity | 60.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 599 | 127.92 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 608 | 127.95 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 19 | 22 |
| 615 | 127.96 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 626 | 128.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 627 | 128.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 632 | 128.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 636 | 128.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 681 | 128.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 683 | 128.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 687 | 128.09 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 760 | 128.17 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 771 | 128.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 787 | 128.20 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 845 | 128.23 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 849 | 128.23 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 859 | 128.23 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 19 |
| 904 | 128.25 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 935 | 128.27 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 937 | 128.27 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 948 | 128.28 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 962 | 128.29 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 980 | 128.32 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 11 |