BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0680600 Os02g0680600|AK060238
         (275 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0680600  Similar to 2-C-methyl-D-erythritol 2,4-cyclodi...   392   e-109

>Os02g0680600 Similar to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase,
           chloroplast precursor (EC 4.6.1.12) (MECPS)
           (MECDP-synthase)
          Length = 275

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/275 (74%), Positives = 204/275 (74%)

Query: 1   MLVSPSPYRKYFGASGARKKTAGFLSIPQPKKPPNKTAKLARSLRAISPRDDAMATASSL 60
           MLVSPSPYRKYFGASGARKKTAGFLSIPQPKKPPNKTAKLARSLRAISPRDDAMATASSL
Sbjct: 1   MLVSPSPYRKYFGASGARKKTAGFLSIPQPKKPPNKTAKLARSLRAISPRDDAMATASSL 60

Query: 61  FLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFR 120
           FL                                                        FR
Sbjct: 61  FLASPVATAPTARARSTPSASPARPSLRLRRPSTLAAAAVQAEHQPAVAAAPKPPALPFR 120

Query: 121 VGHGFDLHRXXXXXXXXXXXXXXXHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFP 180
           VGHGFDLHR               HDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFP
Sbjct: 121 VGHGFDLHRLEPGLPLIIGGIDIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFP 180

Query: 181 DSDPRWKGADSSVFMREAVKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGA 240
           DSDPRWKGADSSVFMREAVKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGA
Sbjct: 181 DSDPRWKGADSSVFMREAVKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGA 240

Query: 241 DPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 275
           DPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK
Sbjct: 241 DPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 275



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,232,711
Number of extensions: 264239
Number of successful extensions: 681
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)