BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0680600 Os02g0680600|AK060238
         (275 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63970.1  | chr1:23738923-23740336 REVERSE LENGTH=232          261   2e-70

>AT1G63970.1 | chr1:23738923-23740336 REVERSE LENGTH=232
          Length = 231

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 137/157 (87%)

Query: 119 FRVGHGFDLHRXXXXXXXXXXXXXXXHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQI 178
           FR+GHGFDLHR               HDRGC+AHSDGDVLLHCVVDAILGALGLPDIGQI
Sbjct: 75  FRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 134

Query: 179 FPDSDPRWKGADSSVFMREAVKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLL 238
           FPDSDP+WKGA SSVF++EAV+LM EAGYE+GNLDATLILQ+PKISP KETIRSNL  LL
Sbjct: 135 FPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLL 194

Query: 239 GADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 275
           GADPSVVNLKAKTHEKVDSLGENRSIAAHTV+LLM+K
Sbjct: 195 GADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,490,887
Number of extensions: 159754
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)