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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0663800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Actin-depolymerizing factor (ADF).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0477) R2 : 0.642
β1 : 1.11 (0.177) R2dD : 0.0375 R2D : 0.0071
β2 : 3.24 (0.118) R2dC : 0.621 R2C : 0.56
β3 : 5.91 (0.68) R2dE : 0.262 R2E : -0.212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.3 (1.56) R2dD*E : 0.15 R2D*E : -0.147
γ1 : 0.395 (0.099) R2dN8 : 0.0159 R2N8 : -0.0236
σ : 0.843
deviance : 327.93
__
_____
C
peak time of C : 19.2
E
wheather : temperature
threshold : 20.2
memory length : 282
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.87 0.838 5.38 1.16 3.27 6.44 1.99 11.6 0.361 19.2 20.13 287 -- --
363.99 0.895 5.28 1.07 3.11 1.4 1.37 -- 0.311 19.3 20.13 287 -- --
327.93 0.843 5.35 1.11 3.24 5.91 -- 10.3 0.395 19.2 20.2 282 -- --
343.33 0.863 5.24 1.24 3.23 1.78 -- -- 0.488 19.3 23.2 348 -- --
868.94 1.38 5.24 0.887 -- 2.99 -- 4.81 0.258 -- 20.2 282 -- --
376.31 0.909 5.3 0.858 3.12 -- 1.26 -- 0.222 19.4 -- -- -- --
380.64 0.914 5.3 0.83 3.12 -- -- -- 0.225 19.4 -- -- -- --
857.11 1.37 5.17 1.13 -- 1.66 -- -- 0.416 -- 23.6 24 -- --
379.79 0.908 5.29 -- 3.19 1.19 -- -- 0.281 19.3 23.3 357 -- --
898.81 1.4 5.22 0.779 -- -- -- -- 0.174 -- -- -- -- --
398.79 0.934 5.32 -- 3.11 -- -- -- 0.133 19.4 -- -- -- --
888.3 1.39 5.21 -- -- 1.29 -- -- 0.241 -- 23.5 17 -- --
914.8 1.41 5.24 -- -- -- -- -- 0.0877 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 309.62 temperature 30 270 < th dose dependent rect. 22 10
14 315.38 temperature 20 270 < th dose dependent rect. 13 18
26 315.60 temperature 20 270 > th dose independent rect. 14 22
49 316.92 temperature 20 270 < th dose dependent sin 9 NA
55 317.20 temperature 20 270 < th dose independent rect. 22 9
75 317.87 temperature 25 720 < th dose dependent rect. 22 1
78 318.00 temperature 25 270 < th dose dependent rect. 1 7
79 318.04 temperature 20 270 < th dose independent sin 8 NA
83 318.21 temperature 20 270 > th dose independent rect. 21 14
94 318.45 temperature 20 270 > th dose independent rect. 4 23
96 318.49 temperature 20 270 < th dose dependent rect. 22 23
99 318.68 temperature 20 270 < th dose independent rect. 22 22
113 319.12 temperature 20 270 < th dose dependent no NA NA
121 319.17 temperature 20 270 < th dose dependent rect. 19 23
133 319.30 temperature 20 270 > th dose independent rect. 17 18
147 319.55 temperature 20 270 < th dose independent rect. 11 21
158 319.62 temperature 20 270 > th dose independent sin 7 NA
182 319.73 temperature 15 270 > th dose dependent rect. 19 14
192 319.87 temperature 20 270 < th dose dependent rect. 1 23
241 320.66 temperature 15 720 > th dose dependent rect. 21 5
323 322.02 temperature 25 90 < th dose dependent rect. 5 5
348 322.35 temperature 20 270 < th dose independent no NA NA
387 322.71 humidity 90 270 < th dose dependent rect. 5 1
435 323.40 temperature 20 270 < th dose dependent rect. 5 1
445 323.77 temperature 20 270 > th dose independent no NA NA
465 324.30 temperature 25 10 < th dose dependent rect. 4 7
496 324.98 temperature 10 270 > th dose dependent sin 10 NA
498 324.99 temperature 20 270 < th dose independent rect. 5 23
522 325.70 temperature 20 270 < th dose independent rect. 5 2
526 325.77 temperature 25 720 < th dose dependent rect. 15 12
544 326.03 temperature 25 720 < th dose dependent sin 15 NA
578 326.51 humidity 80 270 < th dose dependent rect. 23 8
611 327.07 humidity 80 270 < th dose dependent rect. 1 6
615 327.12 temperature 30 10 < th dose dependent rect. 22 13
624 327.20 atmosphere 1005 43200 > th dose independent rect. 22 1
641 327.41 temperature 20 720 < th dose independent rect. 9 15
652 327.57 temperature 20 720 < th dose independent sin 17 NA
664 327.73 temperature 20 720 < th dose dependent rect. 9 15
679 327.86 temperature 20 720 < th dose independent rect. 21 3
728 328.29 temperature 20 720 < th dose independent rect. 18 6
743 328.52 humidity 80 1440 < th dose dependent rect. 23 8
753 328.65 humidity 80 270 < th dose independent rect. 24 7
784 329.09 humidity 80 1440 < th dose independent rect. 23 8
787 329.11 temperature 20 720 > th dose independent rect. 14 14
788 329.13 atmosphere 1005 43200 < th dose independent rect. 22 2
815 329.42 atmosphere 1005 43200 < th dose independent rect. 2 1
844 329.70 atmosphere 1005 43200 > th dose independent rect. 2 1
861 329.88 atmosphere 1005 43200 > th dose independent rect. 22 7
866 329.91 atmosphere 1005 43200 > th dose independent rect. 22 5
871 329.97 atmosphere 1005 43200 < th dose independent rect. 22 5
877 330.00 temperature 30 10 < th dose dependent rect. 20 15
881 330.04 atmosphere 1005 43200 > th dose independent rect. 4 1
885 330.05 humidity 90 270 < th dose independent rect. 4 2
889 330.10 atmosphere 1005 43200 > th dose independent rect. 2 3
909 330.24 temperature 20 720 > th dose independent rect. 15 11
975 330.71 temperature 20 720 > th dose independent sin 15 NA
992 330.79 humidity 80 90 < th dose independent rect. 3 4