Os02g0652600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L19 family protein.
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Os02g0652600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L19 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.88 | 0.378 | 13.3 | -0.307 | 1.33 | -0.437 | 0.475 | -2.36 | -0.659 | 22.5 | 29.4 | 1634 | -- | -- |
| 69.19 | 0.387 | 13.3 | -0.706 | 1.32 | -0.478 | 0.39 | -- | -0.669 | 22.3 | 29.9 | 1404 | -- | -- |
| 65.62 | 0.377 | 13.3 | -0.319 | 1.32 | -0.437 | -- | -2.4 | -0.645 | 22.5 | 29.3 | 1711 | -- | -- |
| 66.62 | 0.38 | 13.3 | -0.918 | 1.32 | -0.739 | -- | -- | -0.787 | 22.6 | 29.47 | 1729 | -- | -- |
| 165.27 | 0.599 | 13.2 | -0.063 | -- | -0.473 | -- | -2.11 | -0.583 | -- | 28.13 | 1207 | -- | -- |
| 85.06 | 0.432 | 13.3 | -0.67 | 1.36 | -- | 0.545 | -- | -0.74 | 22.5 | -- | -- | -- | -- |
| 86.27 | 0.435 | 13.3 | -0.691 | 1.36 | -- | -- | -- | -0.742 | 22.5 | -- | -- | -- | -- |
| 136.38 | 0.544 | 13.3 | -1.16 | -- | -0.91 | -- | -- | -0.849 | -- | 25.7 | 713 | -- | -- |
| 86.55 | 0.433 | 13.3 | -- | 1.31 | -0.582 | -- | -- | -0.703 | 22.6 | 29.2 | 1772 | -- | -- |
| 199.22 | 0.66 | 13.3 | -0.668 | -- | -- | -- | -- | -0.736 | -- | -- | -- | -- | -- |
| 98.88 | 0.465 | 13.3 | -- | 1.35 | -- | -- | -- | -0.665 | 22.4 | -- | -- | -- | -- |
| 151.81 | 0.574 | 13.3 | -- | -- | -1.12 | -- | -- | -0.959 | -- | 26 | 790 | -- | -- |
| 210.99 | 0.678 | 13.3 | -- | -- | -- | -- | -- | -0.662 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.00 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 61.02 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 3 | 61.12 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 6 | 61.53 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 7 | 61.59 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 10 | 61.73 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 12 | 61.80 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 19 | 62.05 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 39 | 62.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 21 |
| 40 | 62.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 21 |
| 41 | 62.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 21 |
| 59 | 62.82 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 62 | 62.85 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 73 | 62.92 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 100 | 63.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 102 | 63.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 103 | 63.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 110 | 63.16 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 123 | 63.24 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 171 | 63.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 176 | 63.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 177 | 63.44 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 179 | 63.44 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 20 |
| 194 | 63.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 200 | 63.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 203 | 63.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 205 | 63.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 208 | 63.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 23 |
| 214 | 63.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 313 | 63.69 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 314 | 63.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 321 | 63.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 323 | 63.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 324 | 63.71 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 325 | 63.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 333 | 63.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 338 | 63.73 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 348 | 63.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 405 | 63.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 426 | 63.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 13 |
| 427 | 63.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 430 | 63.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 13 |
| 432 | 63.86 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 433 | 63.86 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 434 | 63.86 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 437 | 63.86 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |
| 442 | 63.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 445 | 63.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 447 | 63.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 452 | 63.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 475 | 63.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 477 | 63.91 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 481 | 63.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 510 | 63.94 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 515 | 63.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 516 | 63.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 520 | 63.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 537 | 63.97 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 551 | 63.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 597 | 64.05 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 641 | 64.07 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 650 | 64.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 661 | 64.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 695 | 64.12 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 16 | NA |
| 696 | 64.12 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 16 | NA |
| 700 | 64.12 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 16 | NA |
| 701 | 64.13 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 737 | 64.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 807 | 64.25 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 808 | 64.25 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 811 | 64.25 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 831 | 64.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 856 | 64.30 | humidity | 80.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 926 | 64.36 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 944 | 64.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 951 | 64.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 958 | 64.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 990 | 64.40 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 13 | NA |