BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0652600 Os02g0652600|AK068164
(234 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17560.1 | chr4:9780343-9781752 FORWARD LENGTH=226 149 1e-36
AT5G47190.1 | chr5:19164432-19166064 REVERSE LENGTH=230 149 1e-36
AT5G11750.1 | chr5:3787343-3788926 FORWARD LENGTH=230 119 2e-27
AT4G11630.1 | chr4:7019793-7021068 FORWARD LENGTH=226 119 2e-27
AT1G24240.1 | chr1:8586431-8587970 FORWARD LENGTH=223 98 3e-21
>AT4G17560.1 | chr4:9780343-9781752 FORWARD LENGTH=226
Length = 225
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 102/116 (87%), Gaps = 1/116 (0%)
Query: 120 KFGEIIGILNKQFIEEAEKVKTLPDLRPGDIIELRMQRP-NKRRLSLFKGIIIAKHKSGV 178
K G+++GILN++ IE AEKV+ +P++R GDI+E++++ P NKRRLS++KGI++++ +G+
Sbjct: 110 KLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGI 169
Query: 179 HTTIRVRRIIAGVGVEITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKLPRFSTFK 234
HTTIR+RRIIAG+GVEI FPIYSP IKEIKV+ H+KVRRA+LYYL+ KLPR STFK
Sbjct: 170 HTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225
>AT5G47190.1 | chr5:19164432-19166064 REVERSE LENGTH=230
Length = 229
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 100/116 (86%), Gaps = 1/116 (0%)
Query: 120 KFGEIIGILNKQFIEEAEKVKTLPDLRPGDIIELRMQRP-NKRRLSLFKGIIIAKHKSGV 178
K G+I+G+LNK+ IE AE V+ +P LR GDI+E++++ P NKRRLS++KGI++++ +G+
Sbjct: 114 KLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGI 173
Query: 179 HTTIRVRRIIAGVGVEITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKLPRFSTFK 234
HTTIR+RRIIAG+GVEI FPIYSP IKEIKV+ H+KVRRA+LYYL+ KLPR STFK
Sbjct: 174 HTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229
>AT5G11750.1 | chr5:3787343-3788926 FORWARD LENGTH=230
Length = 229
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 86/105 (81%), Gaps = 1/105 (0%)
Query: 124 IIGILNKQFIEEAEKVKTLPDLRPGDIIELRMQRP-NKRRLSLFKGIIIAKHKSGVHTTI 182
I+ I++K+ +EE ++ +P+++PG I++L+++ P NKRR+S+ KG++IA+ +G+++T
Sbjct: 119 IMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 178
Query: 183 RVRRIIAGVGVEITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKL 227
R+RR++AGVGVE FP+YSP ++EIKV+ KKVRRAKLYYL+ K+
Sbjct: 179 RIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKV 223
>AT4G11630.1 | chr4:7019793-7021068 FORWARD LENGTH=226
Length = 225
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 86/105 (81%), Gaps = 1/105 (0%)
Query: 124 IIGILNKQFIEEAEKVKTLPDLRPGDIIELRMQRP-NKRRLSLFKGIIIAKHKSGVHTTI 182
I+ I++K+ +EE ++ +P+++PG I++L+++ P NKRR+S+ KG++IA+ +G+++T
Sbjct: 115 IMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 174
Query: 183 RVRRIIAGVGVEITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKL 227
R+RR++AGVGVE FP+YSP ++EIKV+ KKVRRAKLYYL+ K+
Sbjct: 175 RIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKV 219
>AT1G24240.1 | chr1:8586431-8587970 FORWARD LENGTH=223
Length = 222
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 85/105 (80%), Gaps = 1/105 (0%)
Query: 124 IIGILNKQFIEEAEKVKTLPDLRPGDIIELRMQRP-NKRRLSLFKGIIIAKHKSGVHTTI 182
I+ I++K+ +EE ++ +P+++PG I++L+++ P NKRR+S+ KG++IA+ +G+++T
Sbjct: 112 IMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 171
Query: 183 RVRRIIAGVGVEITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKL 227
R+RR++AGVGVE FP+YSP ++ IKV+ KKVRRAKLYYL+ K+
Sbjct: 172 RIRRLVAGVGVESMFPLYSPNLRVIKVVDKKKVRRAKLYYLREKV 216
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,256,218
Number of extensions: 105193
Number of successful extensions: 349
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 5
Length of query: 234
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 139
Effective length of database: 8,502,049
Effective search space: 1181784811
Effective search space used: 1181784811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)