BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0652600 Os02g0652600|AK068164
         (234 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0652600  Ribosomal protein L19 family protein                293   5e-80
AK060578                                                          293   5e-80
Os02g0205000  Ribosomal protein L19 family protein                122   2e-28

>Os02g0652600 Ribosomal protein L19 family protein
          Length = 234

 Score =  293 bits (751), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 161/220 (73%), Positives = 161/220 (73%)

Query: 15  ISGALLPHAVACHRLPPRPQLLAVSSSFRRLSLTASPRRASRLVPRXXXXXXXXXXXXXX 74
           ISGALLPHAVACHRLPPRPQLLAVSSSFRRLSLTASPRRASRLVPR              
Sbjct: 15  ISGALLPHAVACHRLPPRPQLLAVSSSFRRLSLTASPRRASRLVPRADASAEAGEPEPAA 74

Query: 75  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFGEIIGILNKQFIE 134
                                                        KFGEIIGILNKQFIE
Sbjct: 75  EAEAEAVAASTDAEVEEGEAEAAVAVAEEEQEEEDEPPPPSKPPVKFGEIIGILNKQFIE 134

Query: 135 EAEKVKTLPDLRPGDIIELRMQRPNKRRLSLFKGIIIAKHKSGVHTTIRVRRIIAGVGVE 194
           EAEKVKTLPDLRPGDIIELRMQRPNKRRLSLFKGIIIAKHKSGVHTTIRVRRIIAGVGVE
Sbjct: 135 EAEKVKTLPDLRPGDIIELRMQRPNKRRLSLFKGIIIAKHKSGVHTTIRVRRIIAGVGVE 194

Query: 195 ITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKLPRFSTFK 234
           ITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKLPRFSTFK
Sbjct: 195 ITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKLPRFSTFK 234



>AK060578 
          Length = 234

 Score =  293 bits (751), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 161/220 (73%), Positives = 161/220 (73%)

Query: 15  ISGALLPHAVACHRLPPRPQLLAVSSSFRRLSLTASPRRASRLVPRXXXXXXXXXXXXXX 74
           ISGALLPHAVACHRLPPRPQLLAVSSSFRRLSLTASPRRASRLVPR              
Sbjct: 15  ISGALLPHAVACHRLPPRPQLLAVSSSFRRLSLTASPRRASRLVPRADASAEAGEPEPAA 74

Query: 75  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFGEIIGILNKQFIE 134
                                                        KFGEIIGILNKQFIE
Sbjct: 75  EAEAEAVAASTDAEVEEGEAEAAVAVAEEEQEEEDEPPPPSKPPVKFGEIIGILNKQFIE 134

Query: 135 EAEKVKTLPDLRPGDIIELRMQRPNKRRLSLFKGIIIAKHKSGVHTTIRVRRIIAGVGVE 194
           EAEKVKTLPDLRPGDIIELRMQRPNKRRLSLFKGIIIAKHKSGVHTTIRVRRIIAGVGVE
Sbjct: 135 EAEKVKTLPDLRPGDIIELRMQRPNKRRLSLFKGIIIAKHKSGVHTTIRVRRIIAGVGVE 194

Query: 195 ITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKLPRFSTFK 234
           ITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKLPRFSTFK
Sbjct: 195 ITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKLPRFSTFK 234



>Os02g0205000 Ribosomal protein L19 family protein
          Length = 222

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 82/105 (78%), Gaps = 1/105 (0%)

Query: 124 IIGILNKQFIEEAEKVKTLPDLRPGDIIELRMQRP-NKRRLSLFKGIIIAKHKSGVHTTI 182
           I+ ILNK+ +++    + +PD++PG II++R+Q P NKRR S  KGI+I +  +G++TT 
Sbjct: 113 IMNILNKEAVDKVRGEREIPDVQPGCIIQMRLQVPENKRRESTLKGIVIGRRNAGINTTF 172

Query: 183 RVRRIIAGVGVEITFPIYSPRIKEIKVIRHKKVRRAKLYYLKHKL 227
           R+RR++AGVGVE  FP+YSP IKEIKV+  KKVRRAKLYYL+ ++
Sbjct: 173 RLRRLVAGVGVESVFPLYSPNIKEIKVLDRKKVRRAKLYYLRDRM 217



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,258,131
Number of extensions: 174222
Number of successful extensions: 668
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 5
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)