Os02g0614700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SPla/RYanodine receptor SPRY domain containing protein.
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Os02g0614700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SPla/RYanodine receptor SPRY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.69 | 0.321 | 12.4 | 1.22 | 0.348 | 0.671 | 0.667 | 0.31 | 0.782 | 19.3 | 67 | 9 | -- | -- |
| 46.99 | 0.322 | 12.4 | 1.24 | 0.331 | 0.639 | 0.695 | -- | 0.783 | 19.8 | 67 | 7 | -- | -- |
| 47.82 | 0.322 | 12.4 | 1.2 | 0.362 | 0.678 | -- | 0.338 | 0.782 | 19.2 | 67 | 6 | -- | -- |
| 48.25 | 0.324 | 12.4 | 1.22 | 0.347 | 0.678 | -- | -- | 0.787 | 19.3 | 67.37 | 6 | -- | -- |
| 53.87 | 0.344 | 12.4 | 1.2 | -- | 0.611 | -- | 0.359 | 0.775 | -- | 67 | 6 | -- | -- |
| 57.35 | 0.355 | 12.4 | 1.25 | 0.55 | -- | 0.575 | -- | 0.728 | 23.8 | -- | -- | -- | -- |
| 58.76 | 0.359 | 12.4 | 1.22 | 0.548 | -- | -- | -- | 0.725 | 24 | -- | -- | -- | -- |
| 54.34 | 0.345 | 12.4 | 1.22 | -- | 0.622 | -- | -- | 0.778 | -- | 67 | 6 | -- | -- |
| 87.55 | 0.436 | 12.4 | -- | 0.337 | 0.683 | -- | -- | 0.651 | 19.5 | 67.1 | 6 | -- | -- |
| 77.66 | 0.412 | 12.4 | 1.24 | -- | -- | -- | -- | 0.733 | -- | -- | -- | -- | -- |
| 98.13 | 0.463 | 12.4 | -- | 0.564 | -- | -- | -- | 0.589 | 0.0991 | -- | -- | -- | -- |
| 93.25 | 0.45 | 12.4 | -- | -- | 0.644 | -- | -- | 0.642 | -- | 66.87 | 2 | -- | -- |
| 118.15 | 0.507 | 12.4 | -- | -- | -- | -- | -- | 0.595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.38 | radiation | 1 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 5 | 45.76 | humidity | 70 | 90 | > th | dose dependent | rect. | 12 | 9 |
| 10 | 45.93 | humidity | 70 | 10 | > th | dose dependent | rect. | 12 | 9 |
| 20 | 46.21 | humidity | 70 | 10 | > th | dose dependent | sin | 20 | NA |
| 22 | 46.26 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 6 |
| 30 | 46.42 | humidity | 70 | 10 | > th | dose dependent | rect. | 10 | 11 |
| 33 | 46.47 | humidity | 60 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 34 | 46.48 | humidity | 80 | 270 | > th | dose independent | rect. | 11 | 9 |
| 35 | 46.48 | humidity | 60 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 47 | 46.66 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 49 | 46.69 | humidity | 60 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 50 | 46.71 | humidity | 70 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 62 | 46.79 | humidity | 80 | 10 | > th | dose independent | rect. | 12 | 8 |
| 63 | 46.79 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 11 |
| 84 | 46.93 | humidity | 60 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 88 | 46.95 | humidity | 70 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 90 | 46.98 | humidity | 70 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 93 | 47.00 | humidity | 70 | 10 | > th | dose dependent | no | NA | NA |
| 99 | 47.02 | humidity | 70 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 114 | 47.10 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 7 |
| 149 | 47.24 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 154 | 47.26 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 3 |
| 167 | 47.33 | temperature | 20 | 10 | > th | dose dependent | sin | 20 | NA |
| 169 | 47.34 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 17 |
| 171 | 47.34 | humidity | 60 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 174 | 47.35 | humidity | 70 | 10 | > th | dose dependent | rect. | 8 | 13 |
| 178 | 47.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 200 | 47.42 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 203 | 47.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 8 |
| 212 | 47.47 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 5 |
| 228 | 47.50 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 229 | 47.51 | humidity | 80 | 10 | > th | dose independent | rect. | 10 | 10 |
| 235 | 47.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 15 |
| 261 | 47.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 18 |
| 283 | 47.65 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 291 | 47.66 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 315 | 47.71 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 14 |
| 324 | 47.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 334 | 47.74 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 20 |
| 378 | 47.82 | humidity | 60 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 379 | 47.83 | humidity | 80 | 10 | > th | dose independent | sin | 20 | NA |
| 402 | 47.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 9 |
| 411 | 47.88 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 7 |
| 419 | 47.88 | humidity | 70 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 456 | 47.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 471 | 47.97 | humidity | 70 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 564 | 48.10 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 10 |
| 584 | 48.13 | temperature | 25 | 30 | < th | dose independent | rect. | 12 | 8 |
| 586 | 48.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 587 | 48.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 599 | 48.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 614 | 48.15 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 618 | 48.16 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 647 | 48.18 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 648 | 48.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 682 | 48.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 5 |
| 693 | 48.22 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 719 | 48.24 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 729 | 48.25 | humidity | 70 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 736 | 48.26 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 7 |
| 802 | 48.30 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 806 | 48.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 830 | 48.32 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 833 | 48.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 888 | 48.39 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 895 | 48.39 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 17 |
| 906 | 48.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 937 | 48.44 | temperature | 25 | 90 | > th | dose independent | sin | 21 | NA |
| 939 | 48.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 7 |
| 992 | 48.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 7 |