BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0614700 Os02g0614700|Os02g0614700
         (513 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G06536.1  | chr4:3360746-3361255 FORWARD LENGTH=170            125   4e-29
AT4G06534.1  | chr4:3356870-3358087 FORWARD LENGTH=406             70   2e-12

>AT4G06536.1 | chr4:3360746-3361255 FORWARD LENGTH=170
          Length = 169

 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 68/89 (76%)

Query: 350 GMKLVYESEKSSWAGVDKVVGCGFEPAKRKVFFTVDGQLVHAVSCNADAFSTPMYPVLAS 409
           GMKLV ESEK  WA  +KVVGCG++P K+KV+FTV+  LVH ++C AD F TP+YP LAS
Sbjct: 3   GMKLVCESEKHEWAKENKVVGCGYDPRKKKVYFTVNSHLVHVINCKADEFGTPLYPTLAS 62

Query: 410 SFDVMALVNLGQGKFRYAPANARRTANPC 438
           + +   LVNLGQ  F Y+PAN +RT+NPC
Sbjct: 63  NTEARVLVNLGQSPFYYSPANGQRTSNPC 91



>AT4G06534.1 | chr4:3356870-3358087 FORWARD LENGTH=406
          Length = 405

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 83/249 (33%), Gaps = 46/249 (18%)

Query: 108 FQWADHPRLVTEAAENGWAQFVFAVXX---XXXXXXXXXXLWGLCPACDSGTSRDMADTA 164
           F W DHP LVTEA ENGW +F FAV               L GLC    +G+       +
Sbjct: 98  FIWTDHPALVTEAVENGWTRFGFAVHEPAPLVSGASPGSVLLGLCTT--AGSEDPGVVIS 155

Query: 165 WEVPAGSSERMQAVRLNPXXXXXXXXXXXXTKKWLPGSIPSPLRGGDHDAAGNSSALCLA 224
           WEV  GS E  Q ++ N                              ++       L + 
Sbjct: 156 WEVSNGSVEFTQTIKFNQAF---------------------------NETVNAKKHLMIL 188

Query: 225 RMSXXXXXXXXXXXXFPQDAYFEITIIYLNTRRPEWXXXXXXXXXXXXXXXXXXXKLISF 284
           R              FPQ+AYFEITI+ +                           L+  
Sbjct: 189 RAGLPLPGPQLISSAFPQEAYFEITILEITQHH-------------SGEAGDVGCDLVE- 234

Query: 285 APDAKNAVQETRAATKVDDHHDKQRHTVMSFGXXXXXXXXXXXXXXXGTYASSIGFHSNG 344
               K    +     K  +   K    V+S G               G + +SIGF S+G
Sbjct: 235 GEKTKLFKNQGLKLVKRSEWDGKNEEAVLSLGLATGGSFGAGETRLPGKFPASIGFQSDG 294

Query: 345 AVYLDGMKL 353
           A+YLDG  L
Sbjct: 295 AIYLDGTYL 303



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,599,873
Number of extensions: 188836
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 2
Length of query: 513
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 410
Effective length of database: 8,282,721
Effective search space: 3395915610
Effective search space used: 3395915610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)