BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0614700 Os02g0614700|Os02g0614700
(513 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0614700 SPla/RYanodine receptor SPRY domain containing... 608 e-174
>Os02g0614700 SPla/RYanodine receptor SPRY domain containing protein
Length = 513
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 324/513 (63%), Positives = 324/513 (63%)
Query: 1 MALWLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAQPXXXXXXXXXXXXXXXXXXXXXX 60
MALWLK NAQP
Sbjct: 1 MALWLKLFLSVFLPVAALVAVAVLVYRRRSSSSRNAQPELPESVAGGGGGGDPAVSPGLG 60
Query: 61 KLNIRYNATSGRAGLRFQQLXXXXXXXXXXXXXXXXXXXXXXXXXXPFQWADHPRLVTEA 120
KLNIRYNATSGRAGLRFQQL PFQWADHPRLVTEA
Sbjct: 61 KLNIRYNATSGRAGLRFQQLHHHHHGHVDVRHHHRGGAGAGGAQQGPFQWADHPRLVTEA 120
Query: 121 AENGWAQFVFAVXXXXXXXXXXXXLWGLCPACDSGTSRDMADTAWEVPAGSSERMQAVRL 180
AENGWAQFVFAV LWGLCPACDSGTSRDMADTAWEVPAGSSERMQAVRL
Sbjct: 121 AENGWAQFVFAVAPPRTRSASSSPLWGLCPACDSGTSRDMADTAWEVPAGSSERMQAVRL 180
Query: 181 NPXXXXXXXXXXXXTKKWLPGSIPSPLRGGDHDAAGNSSALCLARMSXXXXXXXXXXXXF 240
NP TKKWLPGSIPSPLRGGDHDAAGNSSALCLARMS F
Sbjct: 181 NPVVAAAAAAVSASTKKWLPGSIPSPLRGGDHDAAGNSSALCLARMSLPLPGPPLAGAPF 240
Query: 241 PQDAYFEITIIYLNTRRPEWXXXXXXXXXXXXXXXXXXXKLISFAPDAKNAVQETRAATK 300
PQDAYFEITIIYLNTRRPEW KLISFAPDAKNAVQETRAATK
Sbjct: 241 PQDAYFEITIIYLNTRRPEWSASRASRRGRDGSSESDRAKLISFAPDAKNAVQETRAATK 300
Query: 301 VDDHHDKQRHTVMSFGXXXXXXXXXXXXXXXGTYASSIGFHSNGAVYLDGMKLVYESEKS 360
VDDHHDKQRHTVMSFG GTYASSIGFHSNGAVYLDGMKLVYESEKS
Sbjct: 301 VDDHHDKQRHTVMSFGLATAASAAPPRPSLAGTYASSIGFHSNGAVYLDGMKLVYESEKS 360
Query: 361 SWAGVDKVVGCGFEPAKRKVFFTVDGQLVHAVSCNADAFSTPMYPVLASSFDVMALVNLG 420
SWAGVDKVVGCGFEPAKRKVFFTVDGQLVHAVSCNADAFSTPMYPVLASSFDVMALVNLG
Sbjct: 361 SWAGVDKVVGCGFEPAKRKVFFTVDGQLVHAVSCNADAFSTPMYPVLASSFDVMALVNLG 420
Query: 421 QGKFRYAPANARRTANPCFLXXXXXXXXXXXXXXXXXXXXXXXXXXXMGRVDSGWLETAS 480
QGKFRYAPANARRTANPCFL MGRVDSGWLETAS
Sbjct: 421 QGKFRYAPANARRTANPCFLRAASAGDDGRSGGSLGLDFDDSGDLFSMGRVDSGWLETAS 480
Query: 481 RMSKSRKENXXXXXXXXXXXXXXXXLFEISLRD 513
RMSKSRKEN LFEISLRD
Sbjct: 481 RMSKSRKENGGGGGASAGDPDADSDLFEISLRD 513
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,739,729
Number of extensions: 315213
Number of successful extensions: 511
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 408
Effective length of database: 11,553,331
Effective search space: 4713759048
Effective search space used: 4713759048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)