Os02g0610400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lupus La protein family protein.
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Os02g0610400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lupus La protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.02 | 0.332 | 8.49 | 0.445 | 0.621 | 0.94 | 0.079 | -0.0773 | 0.217 | 19.1 | 20.22 | 1275 | -- | -- |
| 49.72 | 0.328 | 8.49 | 0.467 | 0.621 | 0.932 | 0.0609 | -- | 0.219 | 19.1 | 20.4 | 1277 | -- | -- |
| 49.66 | 0.328 | 8.5 | 0.441 | 0.621 | 0.915 | -- | -0.129 | 0.209 | 19 | 20.52 | 1284 | -- | -- |
| 49.71 | 0.328 | 8.49 | 0.459 | 0.621 | 0.925 | -- | -- | 0.213 | 19 | 20.6 | 1278 | -- | -- |
| 69.6 | 0.389 | 8.49 | 0.473 | -- | 0.867 | -- | -0.0472 | 0.214 | -- | 20.4 | 1103 | -- | -- |
| 69.48 | 0.391 | 8.45 | 0.846 | 0.615 | -- | 0.253 | -- | 0.422 | 19.5 | -- | -- | -- | -- |
| 69.65 | 0.391 | 8.45 | 0.84 | 0.616 | -- | -- | -- | 0.423 | 19.4 | -- | -- | -- | -- |
| 69.53 | 0.388 | 8.48 | 0.471 | -- | 0.875 | -- | -- | 0.214 | -- | 20.4 | 1060 | -- | -- |
| 52.25 | 0.337 | 8.51 | -- | 0.633 | 1.16 | -- | -- | 0.116 | 19.1 | 19.8 | 2698 | -- | -- |
| 89.9 | 0.443 | 8.43 | 0.83 | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
| 88.27 | 0.439 | 8.47 | -- | 0.609 | -- | -- | -- | 0.329 | 19.5 | -- | -- | -- | -- |
| 72.36 | 0.396 | 8.5 | -- | -- | 1.19 | -- | -- | 0.128 | -- | 19.4 | 2269 | -- | -- |
| 108.09 | 0.485 | 8.45 | -- | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 6 | 48.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 9 | 48.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 13 | 49.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 23 | 49.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 25 | 49.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 36 | 49.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 38 | 49.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 39 | 49.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 41 | 49.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 50 | 49.77 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 61 | 49.82 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 78 | 49.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 115 | 50.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 11 |
| 126 | 50.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 130 | 50.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 153 | 50.11 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 154 | 50.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 174 | 50.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 4 |
| 183 | 50.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 185 | 50.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 221 | 50.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 232 | 50.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 273 | 50.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 286 | 50.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 356 | 50.44 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 370 | 50.45 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 494 | 50.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 520 | 50.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 567 | 50.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 13 |
| 605 | 50.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 641 | 50.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 665 | 50.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 19 |
| 701 | 50.97 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 708 | 50.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 765 | 51.06 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 776 | 51.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 807 | 51.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 5 |
| 844 | 51.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 862 | 51.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 886 | 51.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 931 | 51.25 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 940 | 51.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 973 | 51.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 979 | 51.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 13 |
| 986 | 51.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 11 |