BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0610400 Os02g0610400|AK102477
(467 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32720.1 | chr4:15787313-15789683 FORWARD LENGTH=434 349 2e-96
AT1G79880.1 | chr1:30046222-30048336 REVERSE LENGTH=400 266 2e-71
AT5G46250.1 | chr5:18755388-18758056 FORWARD LENGTH=423 69 4e-12
AT2G43970.1 | chr2:18205535-18208031 REVERSE LENGTH=546 60 3e-09
AT3G19090.1 | chr3:6601466-6603709 FORWARD LENGTH=456 49 4e-06
>AT4G32720.1 | chr4:15787313-15789683 FORWARD LENGTH=434
Length = 433
Score = 349 bits (896), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 195/423 (46%), Positives = 271/423 (64%), Gaps = 49/423 (11%)
Query: 8 PSIDEAKAKSVLRQVEFYFSDSNLPRDKFLRETVEQREDGLVSLALICSFARMKSHLGLD 67
P + E AK+VLRQVEFYFSDSNLP D FL++TV + EDGLVSLALICSF++M+ +L L
Sbjct: 4 PCLTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLG 63
Query: 68 AAVKPETVPEETVLAVAEVLRRSQMLRISEDGKMVGRASELLKADEIIKQVDSRTVAASP 127
+ K + +PE+T+ AVA+ LR S L+IS+DGK VGR++ELLK +++I+Q+++RTVAASP
Sbjct: 64 DS-KGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASP 122
Query: 128 LPYNVKLEDVQSFFAQYAKVNSVRLPRHISNKKHFCGTALVEFSEEDEAKIVLENNLFFA 187
Y+VK EDV+SFF+QY KVNSVR+PRH++ + F G ALVEF E++A+ V++ NL FA
Sbjct: 123 FSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNLVFA 182
Query: 188 GANLEIKLKKEFDAETESKKEAYEKAHPKKDEQNE--------------GYPKGLIVAFK 233
G LE+K KKEFD E E + + P+K N+ YPKGLI++F
Sbjct: 183 GQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSAYEPDYPKGLIISFT 242
Query: 234 LKRITVDGGVQQNCADNDTATEEETPKSMKKTSTGESEERTTVNSDMEEQKSSDDMTEAK 293
LKR +G +Q ++EE T K+M+++ T + D +A
Sbjct: 243 LKRSAEEGTTEQK------SSEEPTDKTMEESETKPA-----------------DTPDAD 279
Query: 294 EVNAGEATESGDKCTVDALLESEKKGDNETSIKDDRGLSGKANSPISREDLKEAFKKFGT 353
+ N GE G + D E + KD++ + + REDLK F KFG
Sbjct: 280 KENTGEVQAEGAEDEDDEKEEKGALATH----KDNKDV-------VLREDLKAVFGKFGD 328
Query: 354 VRYVDFSIGDESGYLRFEDSKAAEKARMSAVLADEGGLIVKDHIVTLEPVTGEAEKDYWN 413
V++VDF +G E+GYLRF++ +A++KAR +AVLA+EGGL VK+ I LEPV GEAEK+YW
Sbjct: 329 VKFVDFKMGSETGYLRFDEPEASQKARAAAVLANEGGLAVKNFIAVLEPVIGEAEKEYWT 388
Query: 414 TIR 416
+R
Sbjct: 389 LLR 391
>AT1G79880.1 | chr1:30046222-30048336 REVERSE LENGTH=400
Length = 399
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/407 (39%), Positives = 236/407 (57%), Gaps = 48/407 (11%)
Query: 7 APSIDEAKAKSVLRQVEFYFSDSNLPRDKFLRETVEQREDGLVSLALICSFARMKSHLGL 66
A S +E AK +L QVEFYFSDSNLP D FL V + +DGLVSL L+CSF+RM++ LGL
Sbjct: 2 ASSFNEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGL 61
Query: 67 DAAVKPETVPEETVLAVAEVLRRSQMLRISEDGKMVGRASELLKADEIIKQVDSRTVAAS 126
+ E +P V VA +LR S L++S +G+ +GR ++L K +E+++QV RT+AAS
Sbjct: 62 -GNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAAS 120
Query: 127 PLPYNVKLEDVQSFFAQYAKVNSVRLPRHISNKKHFCGTALVEFSEEDEAKIVLENNLFF 186
P Y++K+EDV SFF+QYAKVNSVRLP +I++K+ FCGTALVEFS E + + +L +L +
Sbjct: 121 PFEYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDILRQSLVY 180
Query: 187 AGANLEIKLKKEFDAETESKKEAYEKAHPKKDEQNEGYPKGLIVAFKLKRITVDGGVQQN 246
AGA+L + K +FD + +E K K + NE + +G IV F LK I
Sbjct: 181 AGADLVLIPKSDFDCQ----RENMIKQLGKSESHNE-FRRGQIVKFALKWI--------- 226
Query: 247 CADNDTATEEETPKSMKKTSTGESEERTTVNSDMEEQKSSDDMTEAKEVNAGEATESGDK 306
A + T +E P ++ K E E++ T +D E++ N + S K
Sbjct: 227 -ASEEKVTNKEKPSAL-KNKIKEKEDKETGIADREKE------------NGDNSCASLCK 272
Query: 307 CTVDALLESEKKGDNETSIKDDRGLSGKANSPISREDLKEAFKKFGTVRYVDFSIGDESG 366
D L+ N +S E LK+ F++FG+V ++++S G +SG
Sbjct: 273 DNTDQLVVPPWNNSNS----------------VSSEVLKDLFQRFGSVEHIEYSGGLDSG 316
Query: 367 YLRFEDSKAAEKARMSAVLADEGGLIVKDHI-VTLEPVTGEAEKDYW 412
Y+ F DS+ A KAR + GGL+VK++ V LE + GE E++ W
Sbjct: 317 YVWFTDSETAMKARAAVEFV--GGLVVKNNFSVALEAINGEMERELW 361
>AT5G46250.1 | chr5:18755388-18758056 FORWARD LENGTH=423
Length = 422
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 18/143 (12%)
Query: 10 IDEAKAKSVLRQVEFYFSDSNLPRDKFLRETVEQREDGLVSLALICSFARMKSHLGLDAA 69
IDE K ++RQVE+YFSD NLP DKFL +++ + G V ++ I +F +MK L D A
Sbjct: 100 IDELNQK-IIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKK-LTRDHA 157
Query: 70 VKPETVPEETVLAVAEVLRRSQMLRISEDGKMVGRASELLKADEIIKQVDSRTVAASPLP 129
+ + L+ S L +S D K V R S L + I+ TV LP
Sbjct: 158 L------------IVSALKESSFLVVSADEKKVKRLSPLPE----IRDPKIFTVLVENLP 201
Query: 130 YNVKLEDVQSFFAQYAKVNSVRL 152
+ E+++ F + + SV +
Sbjct: 202 EDHSNENIREIFGKAGSIKSVSI 224
>AT2G43970.1 | chr2:18205535-18208031 REVERSE LENGTH=546
Length = 545
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 15/142 (10%)
Query: 10 IDEAKAKSVLRQVEFYFSDSNLPRDKFLRETVEQREDGLVSLALICSFARMKSHLGLDAA 69
+ E + ++ QVE+YFSD NL L + + +G V + ++ SF ++K+ + ++
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNS- 247
Query: 70 VKPETVPEETVLAVAEVLRRSQMLRISEDGKMVGRASELLKADEIIKQVDSRTVAASPLP 129
+A VL+ S L +SEDGK V R S + ++ I+++ SR + A LP
Sbjct: 248 ------------QLAAVLQNSAKLFVSEDGKKVRRISPITES--AIEELQSRIIVAENLP 293
Query: 130 YNVKLEDVQSFFAQYAKVNSVR 151
+ +++ F+ V ++R
Sbjct: 294 EDHCYQNLMKIFSTVGSVKNIR 315
>AT3G19090.1 | chr3:6601466-6603709 FORWARD LENGTH=456
Length = 455
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 25/140 (17%)
Query: 18 VLRQVEFYFSDSNLPRDKFLRETVEQREDGLVSLALICSFARMKS-----HLGLDAAVKP 72
+++QVE+ F+D +L ++ + + + + +G V ++ I S ++K+ HL
Sbjct: 148 IVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHL-------- 199
Query: 73 ETVPEETVLAVAEVLRRSQMLRISEDGKMVGRASELLKADEIIKQVDSRTVAASPLPYNV 132
V+ LR S L +SEDGK V R S+ D +++ RTV A LP +
Sbjct: 200 ----------VSLALRSSSKLVVSEDGKKVKRTSQFTDRDR--EELQGRTVVAENLPDDH 247
Query: 133 KLEDVQSFFAQYAKVNSVRL 152
++++ F V ++R+
Sbjct: 248 SYQNLEKIFGVVGNVKAIRI 267
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.127 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,888,020
Number of extensions: 447590
Number of successful extensions: 2292
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2312
Number of HSP's successfully gapped: 5
Length of query: 467
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 365
Effective length of database: 8,310,137
Effective search space: 3033200005
Effective search space used: 3033200005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)