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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0605400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0319) R2 : 0.00624
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.113 (0.0671) R2dN8 : 0.00805 R2N8 : 0.00624
σ : 0.6
deviance : 165.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.75 0.581 3.12 -0.702 0.0393 0.318 -0.998 -1.22 -0.274 19 19 1988 -- --
155.01 0.58 3.09 -0.569 0.0272 0.567 -1.04 -- -0.261 19.1 19.2 1977 -- --
155.18 0.58 3.13 -0.727 0.0722 0.286 -- -1.43 -0.303 16.7 19 2001 -- --
157.41 0.584 3.09 -0.535 0.0794 0.585 -- -- -0.252 16 18.9 1990 -- --
155.41 0.581 3.12 -0.705 -- 0.276 -- -1.38 -0.285 -- 19 1987 -- --
159.91 0.593 3.06 -0.327 0.044 -- -1.03 -- -0.144 19.1 -- -- -- --
162.45 0.597 3.06 -0.304 0.0794 -- -- -- -0.146 15.4 -- -- -- --
157.78 0.585 3.09 -0.555 -- 0.586 -- -- -0.251 -- 18.75 2023 -- --
163.73 0.596 3.08 -- 0.0956 0.334 -- -- -0.153 15.7 17.2 2526 -- --
162.8 0.596 3.06 -0.308 -- -- -- -- -0.148 -- -- -- -- --
164.89 0.601 3.06 -- 0.0854 -- -- -- -0.112 15.4 -- -- -- --
164.14 0.597 3.06 -- -- 0.356 -- -- -0.134 -- 17.01 2234 -- --
165.3 0.6 3.06 -- -- -- -- -- -0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.39 humidity 90 270 > th dose dependent rect. 11 2
2 137.50 humidity 90 270 > th dose independent rect. 11 2
3 137.62 radiation 1 90 < th dose independent rect. 13 2
4 137.62 radiation 1 90 < th dose dependent rect. 13 2
5 137.77 radiation 1 270 < th dose independent rect. 10 3
6 137.77 radiation 1 270 < th dose dependent rect. 10 3
45 142.42 radiation 20 270 < th dose dependent rect. 12 1
60 143.91 radiation 20 10 < th dose independent rect. 14 1
71 144.72 radiation 20 270 < th dose independent rect. 12 1
76 145.06 wind 7 90 > th dose independent rect. 13 2
83 145.41 wind 5 90 > th dose dependent rect. 13 2
90 146.07 wind 5 10 > th dose independent rect. 13 1
108 147.06 radiation 1 10 < th dose independent rect. 13 1
118 147.06 radiation 1 10 < th dose dependent rect. 13 1
128 147.16 humidity 90 14400 > th dose dependent rect. 6 1
134 147.25 atmosphere 1000 270 < th dose dependent rect. 7 2
147 147.42 radiation 20 10 < th dose dependent rect. 14 1
161 147.70 temperature 20 10 < th dose independent rect. 19 1
165 147.71 temperature 20 10 < th dose dependent rect. 20 1
169 147.72 humidity 90 14400 < th dose independent rect. 7 1
200 147.86 radiation 1 1440 < th dose independent rect. 9 5
202 147.86 radiation 1 1440 < th dose dependent rect. 9 5
214 147.99 radiation 1 1440 < th dose independent rect. 13 1
216 147.99 humidity 90 14400 > th dose dependent rect. 22 1
217 147.99 radiation 1 1440 < th dose dependent rect. 13 1
222 148.02 humidity 90 90 > th dose dependent rect. 18 1
226 148.03 humidity 90 90 > th dose independent rect. 18 1
242 148.16 atmosphere 995 43200 > th dose independent rect. 2 15
245 148.19 atmosphere 995 43200 < th dose independent rect. 24 14
246 148.19 wind 3 10 > th dose dependent rect. 13 1
253 148.22 atmosphere 995 43200 < th dose independent rect. 2 15
256 148.23 atmosphere 995 43200 > th dose independent sin 3 NA
261 148.24 radiation 1 1440 > th dose independent rect. 13 1
266 148.25 humidity 90 14400 > th dose independent rect. 6 2
276 148.31 atmosphere 995 43200 > th dose independent rect. 3 12
281 148.32 atmosphere 995 43200 < th dose independent sin 3 NA
291 148.35 atmosphere 995 43200 > th dose independent rect. 2 10
303 148.40 atmosphere 1000 90 < th dose dependent rect. 6 6
310 148.41 atmosphere 995 43200 < th dose dependent sin 8 NA
334 148.47 radiation 1 1440 > th dose independent rect. 9 5
335 148.47 atmosphere 995 43200 < th dose independent rect. 3 8
341 148.47 atmosphere 1000 10 < th dose dependent rect. 7 5
345 148.49 atmosphere 995 43200 < th dose dependent rect. 22 13
367 148.53 atmosphere 995 43200 < th dose independent rect. 7 19
381 148.56 atmosphere 995 43200 < th dose independent rect. 8 17
397 148.59 atmosphere 995 43200 < th dose dependent rect. 10 23
408 148.60 atmosphere 995 43200 < th dose dependent rect. 9 21
443 148.63 atmosphere 995 43200 < th dose dependent rect. 10 18
449 148.64 wind 9 43200 > th dose dependent rect. 1 1
470 148.66 wind 9 43200 > th dose dependent rect. 9 9
476 148.67 humidity 80 14400 > th dose independent rect. 7 4
495 148.71 atmosphere 995 43200 > th dose independent rect. 5 4
496 148.71 atmosphere 995 43200 < th dose dependent sin 18 NA
506 148.73 radiation 30 4320 < th dose independent rect. 20 12
515 148.74 atmosphere 995 43200 < th dose independent rect. 4 5
520 148.74 atmosphere 995 43200 < th dose dependent no NA NA
521 148.74 atmosphere 995 43200 < th dose dependent rect. 2 7
522 148.74 atmosphere 995 43200 < th dose dependent rect. 22 20
533 148.75 radiation 30 4320 < th dose independent rect. 7 1
584 148.79 radiation 30 4320 < th dose independent rect. 2 6
586 148.79 radiation 30 4320 < th dose independent rect. 23 9
593 148.80 atmosphere 995 43200 < th dose independent rect. 5 3
630 148.85 humidity 70 14400 > th dose dependent rect. 22 13
649 148.88 wind 9 43200 > th dose dependent sin 20 NA
651 148.88 wind 9 43200 > th dose dependent rect. 9 13
656 148.89 atmosphere 1000 43200 < th dose dependent rect. 10 1
674 148.91 wind 3 43200 < th dose dependent rect. 5 4
689 148.94 wind 3 43200 < th dose dependent rect. 6 1
690 148.94 atmosphere 1000 43200 < th dose dependent rect. 9 5
694 148.95 atmosphere 1000 43200 < th dose dependent rect. 10 3
698 148.96 humidity 80 10 > th dose independent rect. 14 1
704 148.97 atmosphere 995 43200 < th dose independent sin 19 NA
731 149.02 atmosphere 995 43200 > th dose independent rect. 20 18
739 149.02 wind 9 43200 > th dose dependent rect. 9 15
740 149.02 wind 9 43200 > th dose dependent rect. 9 18
755 149.05 humidity 90 14400 < th dose independent rect. 21 1
786 149.09 atmosphere 995 43200 > th dose independent sin 19 NA
789 149.09 humidity 80 14400 > th dose dependent rect. 19 14
814 149.13 atmosphere 995 43200 < th dose dependent rect. 4 4
828 149.15 wind 9 43200 > th dose dependent rect. 15 17
829 149.16 atmosphere 995 43200 > th dose independent rect. 6 2
834 149.16 wind 9 43200 > th dose dependent rect. 11 22
853 149.19 wind 9 43200 > th dose independent rect. 15 20
916 149.27 wind 9 14400 > th dose dependent rect. 5 5
953 149.31 wind 9 43200 > th dose dependent rect. 1 17
962 149.32 wind 9 43200 > th dose dependent rect. 1 21
971 149.34 humidity 90 14400 > th dose independent rect. 21 1
987 149.35 wind 9 43200 < th dose independent rect. 15 20
994 149.35 wind 9 43200 > th dose dependent rect. 20 22