BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0605400 Os02g0605400|Os02g0605400
         (461 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59660.1  | chr3:22034426-22038484 REVERSE LENGTH=595          199   2e-51
AT1G03370.1  | chr1:830968-834996 FORWARD LENGTH=1021              57   3e-08

>AT3G59660.1 | chr3:22034426-22038484 REVERSE LENGTH=595
          Length = 594

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/228 (44%), Positives = 133/228 (58%), Gaps = 35/228 (15%)

Query: 264 IKRSQHSLINPAITIFLRTGSGGHGTPPSCSQNGRIRYKFTSFWNRNRTFRALENALQSY 323
           I+RSQH+LINPAITI LR G+GGHG PP  + +GR+RYKF SFWNRN T +AL+ A+ +Y
Sbjct: 291 IRRSQHALINPAITIILRMGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNY 350

Query: 324 RATLEAEKQVRMHSLQQRRSSDVICSKIDDLKTAERSIEQAKAFQPFINEHVLV------ 377
            A LE EK+ R  S  +  SS V       +K  E +      FQ FI E VLV      
Sbjct: 351 HAMLEVEKKERAQSALRAHSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDV 410

Query: 378 ---------------DAT--------------SLSKWYPSDEYGGKIREVMFRSLCHSPL 408
                          D+T              ++  W+ ++EY G++RE+ FRS+C+SP+
Sbjct: 411 FASTPEQVLNVLLADDSTYTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPM 470

Query: 409 CPPDTAVTEWQRASFSKNKTNLIYETKHQAHDVPFGSYFEVASKNNLQ 456
           CPPDTAVTEWQ    S +K  L++ET  Q HDVPFGSYFEV  +  L+
Sbjct: 471 CPPDTAVTEWQHVVLSPDKKVLVFETVQQPHDVPFGSYFEVHCRWRLE 518




 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 14/149 (9%)

Query: 104 DGSPHSRGRT----SYVIKLELLCAKYLIGANLNGSSDPYAVISCGEQRRFSSMVPSSRN 159
           D   H RG T    +Y++K+ELL AK LIGANLNG+SDPYA+++CG ++RFSSMVP SRN
Sbjct: 66  DKIGHLRGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRN 125

Query: 160 PLWGEEFNFLVRELPVEFCTAPVNDSKVTITMYDWDTVCKCKVIGSVTVAVLGEDEAGAT 219
           P+WGEEFNF   ELP          +K+ +T++DWD + K  V+GSVT+ V  E + G  
Sbjct: 126 PMWGEEFNFPTDELP----------AKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPV 175

Query: 220 WFDLDSKSGQICLRFSSAKVFLTSERLFT 248
           W  LDS SGQ+CL  ++ K+ + + R  T
Sbjct: 176 WHSLDSPSGQVCLNINAIKLPVNAPRAVT 204



>AT1G03370.1 | chr1:830968-834996 FORWARD LENGTH=1021
          Length = 1020

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 14/125 (11%)

Query: 117 IKLELLCAKYLIGANLNGSSDPYAVISCGEQRRFSSMVPSSRNPLWGEEFNFLVRELPVE 176
           +++ ++ A+ L   +LNG SDPY  +  G+QR  + +V  + NP W E+F+F V +L  E
Sbjct: 3   LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62

Query: 177 FCTAPVNDSKVTITMYDWDTVCKCKVIGSVTVAVLGEDEA-GATWFDLDSKS-------G 228
              + +++ K     ++ D V + +V  SV++    E+++ G  W+ L+ K        G
Sbjct: 63  LVVSVLDEDK----YFNDDFVGQVRV--SVSLVFDAENQSLGTVWYPLNPKKKGSKKDCG 116

Query: 229 QICLR 233
           +I L+
Sbjct: 117 EILLK 121



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,681,002
Number of extensions: 345660
Number of successful extensions: 824
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,310,137
Effective search space: 2983339183
Effective search space used: 2983339183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)