Os02g0601300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 (EC 1.2.1.12).
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Os02g0601300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 (EC 1.2.1.12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.65 | 0.628 | 14.2 | 0.158 | 3.24 | -4.7 | 4.99 | -3.55 | 0.0547 | 18 | 1.005 | 722 | -- | -- |
| 179.99 | 0.625 | 14.2 | 0.271 | 3.03 | -4.56 | 2.35 | -- | 0.1 | 18.3 | 1.01 | 743 | -- | -- |
| 182.48 | 0.629 | 14.2 | 0.312 | 3.23 | -4.97 | -- | 2.41 | 0.0791 | 18.9 | 1.006 | 810 | -- | -- |
| 188.84 | 0.64 | 14.2 | 0.286 | 2.82 | -4.42 | -- | -- | 0.109 | 18.9 | 1 | 808 | -- | -- |
| 197.64 | 0.655 | 14.1 | 0.231 | -- | -1.46 | -- | 0.599 | 0.219 | -- | 10.01 | 1871 | -- | -- |
| 215.88 | 0.689 | 14.1 | -0.0839 | 0.6 | -- | -1.64 | -- | -0.0848 | 4.19 | -- | -- | -- | -- |
| 222.77 | 0.699 | 14.1 | -0.068 | 0.591 | -- | -- | -- | -0.0758 | 3.52 | -- | -- | -- | -- |
| 198.87 | 0.657 | 14.1 | 0.228 | -- | -1.44 | -- | -- | 0.216 | -- | 10.01 | 1871 | -- | -- |
| 189.7 | 0.641 | 14.2 | -- | 2.52 | -4.03 | -- | -- | 0.0429 | 19 | 1.01 | 810 | -- | -- |
| 242.27 | 0.727 | 14.1 | -0.0431 | -- | -- | -- | -- | -0.0601 | -- | -- | -- | -- | -- |
| 222.89 | 0.698 | 14.1 | -- | 0.589 | -- | -- | -- | -0.0682 | 3.52 | -- | -- | -- | -- |
| 200.2 | 0.659 | 14.1 | -- | -- | -1.43 | -- | -- | 0.22 | -- | 10 | 1871 | -- | -- |
| 242.32 | 0.727 | 14.1 | -- | -- | -- | -- | -- | -0.0553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.82 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 13 |
| 4 | 166.25 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 5 | 166.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 6 | 166.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 11 | 166.83 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 12 |
| 14 | 167.47 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 16 | 167.90 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 18 | 168.13 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 17 |
| 22 | 168.22 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 34 | 169.48 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 65 | 171.20 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 101 | 172.46 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 110 | 172.87 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 138 | 173.94 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 141 | 174.06 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 154 | 174.37 | temperature | 30 | 720 | < th | dose independent | sin | 13 | NA |
| 157 | 174.42 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 5 |
| 160 | 174.48 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 3 |
| 224 | 175.54 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 237 | 175.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 245 | 175.95 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 251 | 176.00 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 277 | 176.31 | humidity | 80 | 90 | > th | dose dependent | rect. | 18 | 5 |
| 285 | 176.42 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 301 | 176.73 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 6 |
| 304 | 176.76 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 8 |
| 319 | 176.93 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 360 | 177.39 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 10 |
| 375 | 177.55 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 23 |
| 408 | 177.87 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 428 | 178.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 431 | 178.17 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 438 | 178.26 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 460 | 178.52 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 465 | 178.58 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 478 | 178.69 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 479 | 178.69 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 15 |
| 532 | 178.77 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 10 |
| 565 | 178.96 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 584 | 179.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 585 | 179.09 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 20 |
| 586 | 179.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 590 | 179.11 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 16 |
| 598 | 179.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 2 |
| 606 | 179.31 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 624 | 179.46 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 662 | 179.62 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 23 |
| 695 | 179.79 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 719 | 179.94 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 734 | 180.07 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 744 | 180.11 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 746 | 180.12 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 18 |
| 775 | 180.28 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 776 | 180.29 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 791 | 180.31 | temperature | 30 | 720 | < th | dose independent | sin | 19 | NA |
| 821 | 180.47 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 16 |
| 824 | 180.48 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 842 | 180.56 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 878 | 180.69 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 879 | 180.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 885 | 180.72 | humidity | 80 | 10 | > th | dose dependent | rect. | 19 | 4 |
| 901 | 180.86 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 3 |
| 916 | 180.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 923 | 180.90 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 17 |
| 936 | 180.97 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 6 |
| 958 | 181.03 | radiation | 1 | 720 | > th | dose independent | sin | 12 | NA |
| 977 | 181.16 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |