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Os02g0580100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF580 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0168) R2 : 0.522
β1 : 1.16 (0.0615) R2dD : 0.385 R2D : 0.19
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.551 (0.0359) R2dN8 : 0.331 R2N8 : 0.137
σ : 0.315
deviance : 45.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.72 0.281 11 0.111 0.304 0.854 -0.657 -5.97 0.553 18.7 30 4260 -- --
37.05 0.284 11 1.09 0.297 0.327 -0.765 -- 0.48 18.5 25.4 3652 -- --
36.77 0.282 11 0.101 0.299 0.867 -- -6.05 0.553 19 30.1 4256 -- --
38.11 0.288 10.9 1.06 0.295 0.293 -- -- 0.491 18.8 25.31 3612 -- --
41.53 0.3 11 0.0226 -- 0.925 -- -6.55 0.543 -- 30.09 4225 -- --
39.28 0.294 10.9 1.15 0.317 -- -0.647 -- 0.558 18.8 -- -- -- --
40.28 0.297 10.9 1.16 0.315 -- -- -- 0.556 19.2 -- -- -- --
42.59 0.304 10.9 1.05 -- 0.322 -- -- 0.492 -- 25.3 3576 -- --
38.58 0.289 11 -- 0.311 0.978 -- -- 0.199 19 18.37 46601 -- --
45.52 0.315 10.9 1.16 -- -- -- -- 0.551 -- -- -- -- --
75.88 0.407 11 -- 0.304 -- -- -- 0.427 19.4 -- -- -- --
43.67 0.308 11 -- -- 0.971 -- -- 0.193 -- 18.3 46667 -- --
80.8 0.42 11 -- -- -- -- -- 0.422 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.00 wind 1 1440 < th dose dependent rect. 6 1
2 34.16 temperature 20 10 > th dose independent rect. 20 18
3 34.43 temperature 20 10 > th dose independent rect. 22 16
4 34.45 wind 1 1440 < th dose independent rect. 6 1
5 34.46 wind 1 1440 > th dose independent rect. 6 1
7 34.56 humidity 90 14400 > th dose dependent rect. 5 1
8 34.61 temperature 10 90 > th dose dependent sin 7 NA
10 34.66 temperature 10 10 > th dose dependent sin 7 NA
11 34.66 temperature 30 90 < th dose dependent sin 7 NA
13 34.68 humidity 60 43200 < th dose dependent rect. 7 1
15 34.69 temperature 20 270 > th dose dependent rect. 20 14
20 34.73 humidity 60 43200 < th dose dependent rect. 6 3
27 34.78 humidity 60 43200 < th dose independent rect. 2 7
30 34.82 humidity 60 43200 < th dose independent rect. 4 5
32 34.82 temperature 30 10 < th dose dependent sin 6 NA
37 34.84 temperature 15 270 > th dose dependent rect. 18 18
44 34.87 humidity 60 43200 < th dose independent rect. 6 3
52 34.89 humidity 60 43200 < th dose dependent rect. 2 8
61 34.91 humidity 60 43200 > th dose independent rect. 2 7
62 34.91 humidity 60 43200 > th dose independent rect. 22 11
70 34.92 humidity 60 43200 > th dose independent rect. 24 9
73 34.92 wind 1 14400 < th dose dependent rect. 23 5
76 34.93 wind 1 14400 < th dose independent rect. 23 4
99 34.97 wind 1 43200 < th dose dependent rect. 5 21
103 34.99 radiation 10 4320 > th dose independent rect. 17 14
110 35.01 wind 1 14400 > th dose independent rect. 23 5
117 35.02 humidity 60 43200 > th dose independent rect. 6 3
123 35.04 temperature 20 10 > th dose independent rect. 18 20
129 35.05 temperature 30 270 < th dose dependent rect. 22 11
130 35.05 temperature 15 10 > th dose dependent rect. 20 18
131 35.06 radiation 10 4320 > th dose dependent rect. 17 14
137 35.08 wind 1 14400 > th dose independent rect. 20 11
139 35.08 wind 1 14400 < th dose dependent rect. 20 12
148 35.09 wind 1 14400 < th dose dependent rect. 17 15
162 35.10 wind 1 14400 < th dose dependent rect. 13 19
165 35.11 wind 1 14400 < th dose independent rect. 20 12
176 35.13 wind 1 43200 > th dose independent rect. 14 1
180 35.13 wind 1 14400 < th dose dependent rect. 22 10
193 35.15 wind 1 14400 > th dose independent rect. 22 9
194 35.15 wind 1 14400 < th dose dependent sin 12 NA
195 35.15 wind 3 43200 < th dose dependent rect. 22 1
196 35.15 radiation 20 4320 < th dose dependent rect. 17 1
227 35.17 temperature 25 270 < th dose dependent rect. 22 13
235 35.18 radiation 10 4320 > th dose dependent rect. 6 1
236 35.18 wind 1 14400 < th dose dependent rect. 20 8
276 35.21 temperature 20 14400 < th dose dependent rect. 6 1
277 35.21 radiation 1 4320 > th dose dependent rect. 17 1
295 35.22 wind 7 14400 < th dose independent rect. 18 1
321 35.24 wind 1 14400 > th dose independent sin 12 NA
325 35.24 wind 1 14400 > th dose independent rect. 12 20
336 35.24 wind 1 43200 < th dose dependent rect. 19 23
338 35.25 wind 1 14400 < th dose independent sin 12 NA
339 35.25 atmosphere 1015 43200 > th dose independent rect. 6 1
351 35.26 atmosphere 1015 43200 < th dose independent rect. 6 1
368 35.27 wind 1 14400 > th dose independent rect. 20 8
397 35.28 wind 1 43200 > th dose independent rect. 19 17
398 35.28 wind 1 43200 > th dose independent rect. 20 19
405 35.28 wind 1 43200 < th dose dependent rect. 19 20
408 35.28 wind 1 43200 < th dose dependent rect. 16 23
416 35.29 radiation 1 43200 > th dose independent rect. 18 11
420 35.29 wind 1 43200 > th dose independent rect. 17 19
423 35.29 wind 1 14400 < th dose independent rect. 12 20
443 35.30 wind 1 43200 < th dose dependent no NA NA
462 35.31 wind 1 14400 < th dose independent rect. 14 18
467 35.31 humidity 60 43200 > th dose dependent rect. 6 1
471 35.31 wind 1 43200 < th dose dependent rect. 21 18
475 35.32 temperature 20 10 > th dose independent sin 6 NA
476 35.32 atmosphere 1015 43200 < th dose independent rect. 23 1
513 35.33 humidity 90 43200 < th dose dependent rect. 6 1
514 35.33 wind 1 43200 < th dose dependent rect. 12 2
523 35.33 wind 1 43200 < th dose dependent rect. 13 23
526 35.34 atmosphere 1015 43200 > th dose independent rect. 23 1
564 35.35 radiation 1 43200 < th dose independent rect. 18 11
565 35.35 atmosphere 1015 43200 < th dose independent rect. 19 14
568 35.35 atmosphere 1015 43200 > th dose dependent rect. 7 1
583 35.36 wind 7 14400 > th dose independent rect. 18 1
612 35.37 atmosphere 1015 43200 > th dose independent rect. 19 5
618 35.37 atmosphere 1015 43200 < th dose independent rect. 22 11
621 35.37 atmosphere 1015 43200 > th dose independent rect. 19 14
631 35.37 temperature 20 270 > th dose independent rect. 18 18
672 35.38 radiation 40 4320 < th dose independent rect. 15 18
673 35.38 wind 1 43200 < th dose independent rect. 19 20
677 35.38 radiation 30 4320 < th dose dependent rect. 17 3
687 35.39 humidity 50 43200 < th dose independent sin 8 NA
688 35.39 atmosphere 1015 43200 < th dose independent sin 10 NA
694 35.39 atmosphere 1015 43200 < th dose independent rect. 19 5
793 35.40 atmosphere 1010 43200 > th dose dependent rect. 11 1
824 35.41 atmosphere 1015 43200 > th dose independent sin 10 NA
886 35.41 wind 3 43200 < th dose dependent rect. 18 6
895 35.41 atmosphere 1015 43200 > th dose dependent rect. 23 9
905 35.42 humidity 50 43200 > th dose independent sin 8 NA
912 35.42 humidity 90 14400 < th dose independent rect. 24 1
966 35.42 atmosphere 1015 43200 > th dose dependent sin 7 NA
968 35.42 atmosphere 1015 43200 > th dose dependent sin 5 NA