BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0580100 Os02g0580100|AK072442
(523 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G25500.2 | chr1:8955437-8957793 REVERSE LENGTH=489 473 e-133
AT5G13760.1 | chr5:4442102-4444565 FORWARD LENGTH=570 112 6e-25
AT3G04440.1 | chr3:1178718-1180537 FORWARD LENGTH=483 63 3e-10
AT3G03700.1 | chr3:916503-918327 FORWARD LENGTH=483 63 4e-10
>AT1G25500.2 | chr1:8955437-8957793 REVERSE LENGTH=489
Length = 488
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/474 (53%), Positives = 299/474 (63%), Gaps = 29/474 (6%)
Query: 40 RRCRDVFWXXXXXXXXXXXXXXXXXTGLNRFGQADRFNIDRFTNLTAAPRFAGSXXXXXX 99
R DVFW GLNRF +DR NIDR+T
Sbjct: 42 RHWHDVFWSAIFVIHLICLGFVLAVLGLNRFRISDRLNIDRYTQ---------------- 85
Query: 100 XXXXXXXXXXXVTPKSELTESYWPYYXXXXXXXXXXXXXXXXXXXXXXXXXRVVMRAAVH 159
+ LTE YWP Y +M+ +VH
Sbjct: 86 ---------GFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANE---MMKVSVH 133
Query: 160 SLTAYLAVVSVLCFWGKHFFWGVAFAVGGALHFLYVMSVLDRFPFTMLVLQKAVRMVWEL 219
LT YLAVVSVLCFW + FFWG AFAVG L FLYV+SV+DR PFTMLVL+KA+++VW L
Sbjct: 134 ILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGL 193
Query: 220 PDVMRIAYAFVLVMLCWMALWSFGVSGILAFHIPNGGQWWALLIFSVSLFWTGAVLSNTV 279
P V+ +A+AF +VML WM+LWSFG +G++A + + G+WW L++ SVSLFWTGAVL NTV
Sbjct: 194 PKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTV 253
Query: 280 HVIVSGMVFLVLIHGGQAAASMPPKPL-LKSLQYAVTTSFGSICYGSLFTAAIRTLRWEI 338
HVIVSGMVF VL H GQ +S P + SL+YAVTTSFGSICYGSLFTAAIRTLRWEI
Sbjct: 254 HVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEI 313
Query: 339 RGIRSKIGNNECLLCCVDFLFHIVETLVRFFNKYAYVQIAINGQSFNRSARDAWELFQST 398
RG RSKI NECLLCCVDFLFH+VETLVRFFNKYAYVQIA+ G+ FN+SARDAWELFQST
Sbjct: 314 RGFRSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQST 373
Query: 399 GVEALVAYDCSGAVXXXXXXXXXXXXXXXXXVWTYFKQSDKAIMVGSTSMXXXXXXXXXX 458
GVEALVAYDCSGAV +W + K SD+ IMV ST+M
Sbjct: 374 GVEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSDRVIMVASTAMLMGMVLVGLG 433
Query: 459 XXXXXXXXXXXYICYAEDPRLIQRWDPDFFDQMSEALHQRLQYRSARAHQILNS 512
YIC+AEDP LIQRWD DF+ +MSE LH+RLQ+RS+RA ++L +
Sbjct: 434 MVVVESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLHRRLQHRSSRAREVLTT 487
>AT5G13760.1 | chr5:4442102-4444565 FORWARD LENGTH=570
Length = 569
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 14/297 (4%)
Query: 182 VAFAVGGALHFLYVMSVLDRFPFTMLVLQKAVRMVWELPDVMRIAYAFVLVMLCWMALWS 241
+AF++G L Y V R F +L K++ V + D+ Y + WM++W
Sbjct: 252 IAFSIGNGL---YACWVTRRIKFCSKILVKSLEPVSKFSDLNLPTYYMLAAGFLWMSMWI 308
Query: 242 FGVSGILAFHIPNGGQWWALLIFSVSLFWTGAVLSNTVHVIVSGMVFLVLIHGGQAAASM 301
FGV G L F+ P ++ +SL WT V+ N V++ VS ++ L + G Q++
Sbjct: 309 FGVIGALNFYFPP----LVIIGLVLSLAWTTEVMRNIVNLTVSRVIALYYLRGMQSSTRF 364
Query: 302 PPKPLLKSLQYAVTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHI 361
S Q A++ + GS C GSLF I LR RG+ G +E + CC + +
Sbjct: 365 -------SFQRALSRNLGSACLGSLFVPTIEALRILARGLNLLKGEDEFMFCCANCCLRL 417
Query: 362 VETLVRFFNKYAYVQIAINGQSFNRSARDAWELFQSTGVEALVAYDCSGAVXXXXXXXXX 421
++ + N +A+VQIA G+ F R+++D W+LF+ + +V D + ++
Sbjct: 418 MDFIFEHGNGWAFVQIAAYGKGFVRASQDTWKLFEDEDMVEIVDADITSSICFLTGICSG 477
Query: 422 XXXXXXXXVWTYFKQSDKAIMVGSTSMXXXXXXXXXXXXXXXXXXXXXYICYAEDPR 478
WT+ + + Y CYAE+P
Sbjct: 478 CVCLIVAAAWTHTVYKPFTATISLLAFFIGYLMTRISMALPHACVGCYYTCYAENPE 534
>AT3G04440.1 | chr3:1178718-1180537 FORWARD LENGTH=483
Length = 482
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 15/241 (6%)
Query: 266 VSLFWTGAVLSNTVHVIVSGMVFLVLIHGGQAAASMPPKPLLKSLQYAVTTSFGSICYGS 325
+SL WT V+ N V +S ++ HG A + +K L GSIC GS
Sbjct: 234 ISLAWTMQVIKNVQQVAISRARYVNFAHGEDMDAWNAFRITMKHLT-------GSICVGS 286
Query: 326 LFTAAIRTLRWEIRGIRSKIGN-NECLLCCVDFLFHIVETLVRFFNKYAYVQIAINGQSF 384
I +R IR + G+ +E + D I L+ N++ +V + + F
Sbjct: 287 TLVPIIVFIRGSIRSVNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHVGTYDKGF 346
Query: 385 NRSARDAWELFQS-TGVEALVAYDCSGAVXXXXXXXXXXXXXXXXXVWTYFKQSDKAIMV 443
++ D W+ F+S TG+E L+ D + + +W D A+ V
Sbjct: 347 MEASSDTWKKFRSTTGLEKLIDSDLTSSFCFLSAVSVGAVSSLTAGIWMLLIHKDYALEV 406
Query: 444 GSTSMXXXXXXXXXXXXXXXXXXXXXYICYAEDPRLIQRWDPDFFDQMSEALHQRLQYRS 503
+ Y+ Y+EDP+ ++ FD QRLQ S
Sbjct: 407 TLYAFIIGYFVGRVGLAWLQACVLAYYVAYSEDPQSMR------FDGTIPQRIQRLQMLS 460
Query: 504 A 504
A
Sbjct: 461 A 461
>AT3G03700.1 | chr3:916503-918327 FORWARD LENGTH=483
Length = 482
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 15/241 (6%)
Query: 266 VSLFWTGAVLSNTVHVIVSGMVFLVLIHGGQAAASMPPKPLLKSLQYAVTTSFGSICYGS 325
+SL WT V+ N V +S ++ HG A + +K L GSIC GS
Sbjct: 234 ISLAWTMQVIKNVQQVAISRARYVNFAHGEDMDAWNAFRITMKHLT-------GSICVGS 286
Query: 326 LFTAAIRTLRWEIRGIRSKIGN-NECLLCCVDFLFHIVETLVRFFNKYAYVQIAINGQSF 384
I +R IR + G+ +E + D I L+ N++ +V + + F
Sbjct: 287 TLVPIIVFIRGSIRSVNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHVGTYDKGF 346
Query: 385 NRSARDAWELFQS-TGVEALVAYDCSGAVXXXXXXXXXXXXXXXXXVWTYFKQSDKAIMV 443
++ D W+ F+S TG+E L+ D + + +W D A+ V
Sbjct: 347 MEASSDTWKKFRSTTGLEKLIDSDLTSSFCFLSAVSVGAVSSLTAGIWMLLIHKDYALEV 406
Query: 444 GSTSMXXXXXXXXXXXXXXXXXXXXXYICYAEDPRLIQRWDPDFFDQMSEALHQRLQYRS 503
+ Y+ Y+EDP+ ++ FD QRLQ S
Sbjct: 407 TLYAFIIGYFVGRVGLAWLQACVLAYYVAYSEDPQSMR------FDGTIPQRIQRLQMLS 460
Query: 504 A 504
A
Sbjct: 461 A 461
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.138 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,265,571
Number of extensions: 270753
Number of successful extensions: 738
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 4
Length of query: 523
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 420
Effective length of database: 8,282,721
Effective search space: 3478742820
Effective search space used: 3478742820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 114 (48.5 bits)