Os02g0575200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA/pantothenate metabolism flavoprotein, C-terminal domain containing protein.
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Os02g0575200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA/pantothenate metabolism flavoprotein, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 353.55 | 0.883 | 5.84 | -2.57 | 1.71 | -1.84 | -2.88 | -1.69 | -0.577 | 7.84 | 68.02 | 1217 | -- | -- |
| 358.89 | 0.882 | 5.87 | -2.76 | 1.72 | -1.95 | -3.03 | -- | -0.628 | 7.9 | 68.16 | 1215 | -- | -- |
| 377.1 | 0.904 | 5.83 | -2.59 | 1.73 | -1.82 | -- | -2.16 | -0.562 | 7.74 | 68.64 | 1213 | -- | -- |
| 385.92 | 0.915 | 5.87 | -2.85 | 1.72 | -1.96 | -- | -- | -0.621 | 7.75 | 68.09 | 1215 | -- | -- |
| 524.86 | 1.07 | 5.93 | -2.48 | -- | -1.84 | -- | -1.87 | -0.765 | -- | 72.37 | 1304 | -- | -- |
| 503.52 | 1.05 | 5.88 | -2.37 | 1.65 | -- | -3.07 | -- | -0.621 | 7.12 | -- | -- | -- | -- |
| 525.89 | 1.07 | 5.87 | -2.44 | 1.67 | -- | -- | -- | -0.618 | 6.66 | -- | -- | -- | -- |
| 531.27 | 1.07 | 5.98 | -2.8 | -- | -1.92 | -- | -- | -0.886 | -- | 71.88 | 1314 | -- | -- |
| 589.64 | 1.13 | 5.85 | -- | 1.62 | -1.76 | -- | -- | -0.542 | 7.54 | 74.25 | 1268 | -- | -- |
| 671.59 | 1.21 | 5.91 | -2.4 | -- | -- | -- | -- | -0.585 | -- | -- | -- | -- | -- |
| 682.44 | 1.22 | 5.81 | -- | 1.64 | -- | -- | -- | -0.347 | 6.75 | -- | -- | -- | -- |
| 697.4 | 1.23 | 6.01 | -- | -- | -3.11 | -- | -- | -0.614 | -- | 82 | 1381 | -- | -- |
| 823.26 | 1.34 | 5.85 | -- | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 364.45 | humidity | 80 | 1440 | < th | dose dependent | sin | 11 | NA |
| 3 | 367.02 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 9 | 370.75 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 39 | 375.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 42 | 375.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 52 | 375.86 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 71 | 376.34 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 73 | 376.35 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 75 | 376.38 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 79 | 376.48 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 95 | 376.74 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 22 |
| 97 | 376.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 100 | 376.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 107 | 376.82 | humidity | 50 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 108 | 376.85 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 115 | 376.92 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 124 | 377.11 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 150 | 377.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 160 | 377.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 224 | 378.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 366 | 380.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 22 |
| 390 | 380.25 | radiation | 10 | 1440 | > th | dose independent | sin | 12 | NA |
| 400 | 380.34 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 459 | 380.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 466 | 381.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 486 | 381.12 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 500 | 381.29 | humidity | 70 | 1440 | > th | dose independent | sin | 17 | NA |
| 501 | 381.29 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 504 | 381.30 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 509 | 381.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 511 | 381.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 540 | 381.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 549 | 381.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 550 | 381.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 567 | 381.64 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 573 | 381.69 | humidity | 70 | 1440 | < th | dose independent | sin | 17 | NA |
| 578 | 381.71 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 644 | 382.24 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 696 | 382.47 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 731 | 382.60 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 781 | 382.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 793 | 383.02 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 832 | 383.25 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 869 | 383.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 882 | 383.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 896 | 383.67 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |