Os02g0565200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Microsomal signal peptidase 25 kDa subunit family protein.
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Os02g0565200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Microsomal signal peptidase 25 kDa subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.94 | 0.162 | 10.6 | 0.162 | 0.0997 | 0.475 | -0.451 | 0.0039 | -0.0226 | 11.6 | 20.31 | 1490 | -- | -- |
| 11.83 | 0.16 | 10.6 | 0.114 | 0.0989 | 0.432 | -0.468 | -- | -0.0491 | 11.5 | 20.93 | 2794 | -- | -- |
| 12.74 | 0.166 | 10.6 | 0.143 | 0.104 | 0.457 | -- | -0.0167 | -0.0376 | 12 | 20.6 | 1568 | -- | -- |
| 12.69 | 0.166 | 10.6 | 0.0852 | 0.116 | 0.462 | -- | -- | -0.0505 | 12.7 | 20.69 | 2820 | -- | -- |
| 13.34 | 0.17 | 10.6 | 0.136 | -- | 0.458 | -- | -0.0329 | -0.0312 | -- | 20.7 | 1588 | -- | -- |
| 16.54 | 0.191 | 10.6 | 0.356 | 0.0906 | -- | -0.488 | -- | 0.0794 | 10.9 | -- | -- | -- | -- |
| 17.49 | 0.196 | 10.6 | 0.337 | 0.0976 | -- | -- | -- | 0.0786 | 12.3 | -- | -- | -- | -- |
| 13.35 | 0.17 | 10.6 | 0.142 | -- | 0.462 | -- | -- | -0.0308 | -- | 20.67 | 1588 | -- | -- |
| 12.74 | 0.166 | 10.6 | -- | 0.106 | 0.533 | -- | -- | -0.0567 | 12.4 | 19.9 | 3098 | -- | -- |
| 18.08 | 0.199 | 10.6 | 0.334 | -- | -- | -- | -- | 0.0771 | -- | -- | -- | -- | -- |
| 20.49 | 0.212 | 10.6 | -- | 0.0929 | -- | -- | -- | 0.041 | 12.1 | -- | -- | -- | -- |
| 13.39 | 0.17 | 10.6 | -- | -- | 0.544 | -- | -- | -0.0615 | -- | 19.9 | 3105 | -- | -- |
| 21.03 | 0.214 | 10.6 | -- | -- | -- | -- | -- | 0.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 3 | 11.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 5 | 11.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 16 | 11.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 26 | 11.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 11 |
| 39 | 11.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 40 | 11.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 49 | 11.51 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 81 | 11.55 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 97 | 11.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 105 | 11.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 138 | 11.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 149 | 11.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 204 | 11.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 206 | 11.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 362 | 11.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 370 | 11.73 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 382 | 11.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 420 | 11.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 422 | 11.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 555 | 11.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 766 | 11.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |