BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0565200 Os02g0565200|AK102047
         (191 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39960.1  | chr2:16681666-16683491 REVERSE LENGTH=193          237   3e-63
AT4G04200.1  | chr4:2027165-2028866 FORWARD LENGTH=191            193   5e-50

>AT2G39960.1 | chr2:16681666-16683491 REVERSE LENGTH=193
          Length = 192

 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 130/178 (73%)

Query: 14  AKKANLLDPYSIKHLLDETVSEVAKSKGYPEDARLSNRRXXXXXXXXXXXXXXQFYPRKF 73
            KKANLLD +SIKH+LDE+VS++  S+GY ED RLSN +              QFY +KF
Sbjct: 13  VKKANLLDHHSIKHILDESVSDIVTSRGYKEDVRLSNLKLILGTIIIVVALVAQFYNKKF 72

Query: 74  PENRDVLLACIALYAALNVALQIVTYTKEKNAILFTYPPAGSFNRTGLVISSKLPRLSDM 133
           PENRD L+ CIALY  LN  LQ++ YTKEKNAILFTYPP GSF  TGLV+SSKLPR SD 
Sbjct: 73  PENRDFLIGCIALYVVLNAVLQLILYTKEKNAILFTYPPEGSFTSTGLVVSSKLPRFSDQ 132

Query: 134 YTLTIASADPHSKSSSEPVHFTKSVTKWFTKDGVLVEGLFWKDVEKLIDDYNSDHRSK 191
           YTLTI SADP S S+ + V  TKSVT+WFTKDGVLVEGLFWKDVE LI +Y  +   K
Sbjct: 133 YTLTIDSADPKSISAGKSVQLTKSVTQWFTKDGVLVEGLFWKDVEALIKNYAEEEPKK 190



>AT4G04200.1 | chr4:2027165-2028866 FORWARD LENGTH=191
          Length = 190

 Score =  193 bits (490), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 113/172 (65%), Gaps = 3/172 (1%)

Query: 14  AKKANLLDPYSIKHLLDETVSEVAKSKGYPEDARLSNRRXXXXXXXXXXXXXXQFYPRKF 73
            KK NLLD  +IKHLLDE+VS++  S+GY ED RLSN +              QFY +K 
Sbjct: 13  VKKVNLLDHIAIKHLLDESVSDIVTSRGYKEDVRLSNVKFLLGGIIIVVALVAQFYNKKC 72

Query: 74  PENRDVLLACIALYAALNVALQIVTYTKEKNAILFTYPPAGSFNRTGLVISSKLPRLSDM 133
                 LL     Y  L   +Q++ Y KEKNAILFTYP  GSF  TGLV+SSKLPR SD 
Sbjct: 73  G---ICLLLDFGKYVVLTAVMQLILYIKEKNAILFTYPLEGSFTSTGLVVSSKLPRFSDQ 129

Query: 134 YTLTIASADPHSKSSSEPVHFTKSVTKWFTKDGVLVEGLFWKDVEKLIDDYN 185
           YTLTI SADP S S+ + V FTKSVT+W TKDGVLVEGLFWKDVE L+ +Y 
Sbjct: 130 YTLTIDSADPQSISAGKSVQFTKSVTQWLTKDGVLVEGLFWKDVEALVKEYT 181



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,929,788
Number of extensions: 136990
Number of successful extensions: 375
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 98
Effective length of database: 8,556,881
Effective search space: 838574338
Effective search space used: 838574338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)