Os02g0564500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SFT2-like family protein.
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Os02g0564500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SFT2-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.26 | 0.323 | 10.8 | 0.365 | 0.66 | -0.355 | 0.673 | -2.98 | 0.287 | 21.9 | 18.6 | 674 | -- | -- |
| 49.82 | 0.331 | 10.7 | 0.958 | 0.504 | -0.716 | -0.0753 | -- | 0.46 | 20.3 | 24.14 | 182 | -- | -- |
| 48.1 | 0.323 | 10.7 | 0.594 | 0.586 | -0.541 | -- | -2.31 | 0.36 | 21 | 17.28 | 238 | -- | -- |
| 49.84 | 0.331 | 10.7 | 0.96 | 0.504 | -0.714 | -- | -- | 0.46 | 20.3 | 24.14 | 182 | -- | -- |
| 61.63 | 0.366 | 10.7 | 0.728 | -- | -0.829 | -- | -2.05 | 0.415 | -- | 13.98 | 3 | -- | -- |
| 57.95 | 0.357 | 10.7 | 0.847 | 0.545 | -- | 0.0912 | -- | 0.374 | 22.4 | -- | -- | -- | -- |
| 57.98 | 0.357 | 10.7 | 0.843 | 0.545 | -- | -- | -- | 0.374 | 22.4 | -- | -- | -- | -- |
| 63.4 | 0.372 | 10.7 | 0.984 | -- | -0.72 | -- | -- | 0.486 | -- | 22 | 20 | -- | -- |
| 72.31 | 0.398 | 10.7 | -- | 0.503 | -0.537 | -- | -- | 0.286 | 21.3 | 26.54 | 110 | -- | -- |
| 76.15 | 0.408 | 10.7 | 0.852 | -- | -- | -- | -- | 0.376 | -- | -- | -- | -- | -- |
| 76.71 | 0.41 | 10.7 | -- | 0.55 | -- | -- | -- | 0.28 | 22.5 | -- | -- | -- | -- |
| 86.86 | 0.434 | 10.7 | -- | -- | -0.628 | -- | -- | 0.29 | -- | 26.3 | 3 | -- | -- |
| 95.3 | 0.456 | 10.7 | -- | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 2 | 47.16 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 8 | 47.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 13 | 47.44 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 23 | 47.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 27 | 47.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 64 | 47.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 73 | 47.69 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 76 | 47.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 101 | 47.77 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 115 | 47.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 124 | 47.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 167 | 47.89 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 199 | 47.97 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 206 | 47.99 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 214 | 48.00 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 240 | 48.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 271 | 48.09 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 292 | 48.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 296 | 48.13 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 345 | 48.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 381 | 48.32 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 399 | 48.35 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 404 | 48.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 414 | 48.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 417 | 48.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 442 | 48.43 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 451 | 48.44 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 463 | 48.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 471 | 48.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 489 | 48.50 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 526 | 48.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 531 | 48.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 534 | 48.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 541 | 48.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 542 | 48.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 555 | 48.59 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 582 | 48.62 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 592 | 48.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 596 | 48.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 605 | 48.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 627 | 48.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 641 | 48.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 686 | 48.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 729 | 48.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 755 | 48.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 795 | 48.88 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 820 | 48.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 828 | 48.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 869 | 48.96 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 907 | 48.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 970 | 49.05 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 986 | 49.06 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 997 | 49.07 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 10 |