BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0564500 Os02g0564500|AK103450
         (171 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0564500  SFT2-like family protein                            347   2e-96
Os01g0219100  SFT2-like family protein                            174   2e-44

>Os02g0564500 SFT2-like family protein
          Length = 171

 Score =  347 bits (891), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MDTMRGALERARMLVGMEVDEESAPEEQSFFDDVTRNCALTTTQRLYGFAICLAAGLTCT 60
           MDTMRGALERARMLVGMEVDEESAPEEQSFFDDVTRNCALTTTQRLYGFAICLAAGLTCT
Sbjct: 1   MDTMRGALERARMLVGMEVDEESAPEEQSFFDDVTRNCALTTTQRLYGFAICLAAGLTCT 60

Query: 61  FLSMLVFFNPVKFGVTFTLGNLMALGSTAFLIGPKRQFDMMLDSVRIYATAVYIASIIIA 120
           FLSMLVFFNPVKFGVTFTLGNLMALGSTAFLIGPKRQFDMMLDSVRIYATAVYIASIIIA
Sbjct: 61  FLSMLVFFNPVKFGVTFTLGNLMALGSTAFLIGPKRQFDMMLDSVRIYATAVYIASIIIA 120

Query: 121 LFCALFVHSKLLTLLAIILEFGALVWYSLSYIPFARSVVSKVMTSCFDTEF 171
           LFCALFVHSKLLTLLAIILEFGALVWYSLSYIPFARSVVSKVMTSCFDTEF
Sbjct: 121 LFCALFVHSKLLTLLAIILEFGALVWYSLSYIPFARSVVSKVMTSCFDTEF 171



>Os01g0219100 SFT2-like family protein
          Length = 166

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 110/160 (68%), Gaps = 2/160 (1%)

Query: 12  RMLVGMEVDEESAPEEQSFFDDVTRNCALTTTQRLYGFAICLAAGLTCTFLSMLVFFNPV 71
           R L G + DEE    E S   D    C+L+  QR+YGFA CL AGL    LS++VF  P+
Sbjct: 9   RALAGGDDDEEQ--PEDSILGDTEGICSLSPVQRVYGFAACLVAGLALMILSLVVFVRPI 66

Query: 72  KFGVTFTLGNLMALGSTAFLIGPKRQFDMMLDSVRIYATAVYIASIIIALFCALFVHSKL 131
           KF V FT GN++A+GSTAFLIGP +Q  MMLD VR+YATA+Y   + +AL  AL++HSK+
Sbjct: 67  KFAVMFTFGNILAVGSTAFLIGPSQQLRMMLDPVRVYATAIYGGFVFLALIFALWIHSKV 126

Query: 132 LTLLAIILEFGALVWYSLSYIPFARSVVSKVMTSCFDTEF 171
           LTL+AII E  AL WYSLSYIPFAR +VS +M    DTE 
Sbjct: 127 LTLIAIICEICALFWYSLSYIPFARRMVSDLMVKLCDTEL 166



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,587,336
Number of extensions: 152199
Number of successful extensions: 449
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 152 (63.2 bits)