BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0564500 Os02g0564500|AK103450
(171 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23550.1 | chr5:7939914-7941479 REVERSE LENGTH=176 270 3e-73
AT5G24170.1 | chr5:8189744-8191355 REVERSE LENGTH=164 171 1e-43
AT4G26550.1 | chr4:13402755-13404208 REVERSE LENGTH=226 60 7e-10
AT5G56020.1 | chr5:22684586-22686206 FORWARD LENGTH=231 54 3e-08
>AT5G23550.1 | chr5:7939914-7941479 REVERSE LENGTH=176
Length = 175
Score = 270 bits (690), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 131/175 (74%), Positives = 151/175 (86%), Gaps = 4/175 (2%)
Query: 1 MDTMRGALERARMLVGMEV-DEESAPEEQS---FFDDVTRNCALTTTQRLYGFAICLAAG 56
MD M A+E+ +MLVGMEV DE+ A +E+S F +D+ RNCALTT QR YGFAICL+AG
Sbjct: 1 MDKMNQAIEKMKMLVGMEVEDEQQAADEESSLSFMEDLNRNCALTTKQRFYGFAICLSAG 60
Query: 57 LTCTFLSMLVFFNPVKFGVTFTLGNLMALGSTAFLIGPKRQFDMMLDSVRIYATAVYIAS 116
LTCT LSMLVFFNPVKFG+TFTLGNLMALGSTAFLIGP+RQ MMLD RIYATA+Y+AS
Sbjct: 61 LTCTLLSMLVFFNPVKFGITFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLAS 120
Query: 117 IIIALFCALFVHSKLLTLLAIILEFGALVWYSLSYIPFARSVVSKVMTSCFDTEF 171
IIIALFCAL+V +KLLTLLAIILEF L+WYSLSYIPFAR++VSK+ +CFDTEF
Sbjct: 121 IIIALFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMVSKIFMTCFDTEF 175
>AT5G24170.1 | chr5:8189744-8191355 REVERSE LENGTH=164
Length = 163
Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Query: 29 SFFDDVTRN-CALTTTQRLYGFAICLAAGLTCTFLSMLVFFNPVKFGVTFTLGNLMALGS 87
SF +D + CAL+TTQR+YGFA LA GL FLSM+VF P+KF + FT GN++A+GS
Sbjct: 20 SFLEDGSEGLCALSTTQRMYGFAASLATGLLLMFLSMIVFGIPIKFALLFTFGNVLAIGS 79
Query: 88 TAFLIGPKRQFDMMLDSVRIYATAVYIASIIIALFCALFVHSKLLTLLAIILEFGALVWY 147
TAFL+GP++Q MM D VR AT++YI +++AL CAL +HSK+LT+LAI+ E AL+WY
Sbjct: 80 TAFLMGPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAILCEICALIWY 139
Query: 148 SLSYIPFARSVVSKVMTSCFDTE 170
SLSYIPFAR +VS++M DTE
Sbjct: 140 SLSYIPFARRMVSEIMIRLCDTE 162
>AT4G26550.1 | chr4:13402755-13404208 REVERSE LENGTH=226
Length = 225
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 35 TRNCALTTTQRLYGFAICLAAGLTCTFLSMLVFFN-----PVKFGVTFTLGNLMALGSTA 89
+ ++ + + L F + LA+G+ F++ +F P KF + FTLG +GS
Sbjct: 79 SATSSMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCGFIIGSFF 138
Query: 90 FLIGPKRQFDMMLDSVRIYATAVYIASIIIALFCALFVHSKLLTLLAIILEFGALVWYSL 149
L GPK Q M R+ +T +IA+++ ++ ++ +HS +L++L +L+ ALV+Y +
Sbjct: 139 ALRGPKNQLAHMSSMERLPSTLGFIATMVGTIYVSMVLHSYILSVLFSVLQVLALVYYCI 198
Query: 150 SYIPFARS 157
SY P S
Sbjct: 199 SYFPGGSS 206
>AT5G56020.1 | chr5:22684586-22686206 FORWARD LENGTH=231
Length = 230
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 39 ALTTTQRLYGFAICLAAGLTCTFLSMLVFFN-----PVKFGVTFTLGNLMALGSTAFLIG 93
++ + + L F + LA+G+ F++ +F P KF + FTLG +GS L G
Sbjct: 88 SMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCGFIIGSFFALRG 147
Query: 94 PKRQFDMMLDSVRIYATAVYIASIIIALFCALFVHSKLLTLLAIILEFGALVWYSLSYIP 153
P+ Q M + R+ T +IA+++ ++ ++ +HS +L+++ L+ AL +Y +SY P
Sbjct: 148 PQNQLAHMSSAERLPLTLGFIATMVGTIYVSMVLHSYILSVIFSALQVIALAYYCISYFP 207
Query: 154 FARS 157
S
Sbjct: 208 GGSS 211
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.140 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,135,299
Number of extensions: 108927
Number of successful extensions: 334
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 80
Effective length of database: 8,611,713
Effective search space: 688937040
Effective search space used: 688937040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 108 (46.2 bits)