Os02g0562100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RecA bacterial DNA recombination family protein.
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Os02g0562100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RecA bacterial DNA recombination family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.78 | 0.485 | 6.66 | 2.47 | 2.29 | 1.04 | 1.27 | -2.31 | 0.442 | 17.9 | 68.56 | 1497 | -- | -- |
| 114.38 | 0.498 | 6.65 | 2.4 | 2.27 | 1.03 | 1.07 | -- | 0.435 | 17.9 | 71 | 1478 | -- | -- |
| 110.15 | 0.489 | 6.66 | 2.47 | 2.38 | 1.08 | -- | -2.57 | 0.438 | 17.9 | 68.82 | 1628 | -- | -- |
| 116.17 | 0.502 | 6.66 | 2.22 | 2.21 | 0.951 | -- | -- | 0.399 | 18.2 | 68.84 | 1344 | -- | -- |
| 342.31 | 0.866 | 6.66 | 2.26 | -- | -0.784 | -- | -1.73 | 0.191 | -- | 68.82 | 1628 | -- | -- |
| 125.88 | 0.526 | 6.68 | 2.24 | 2.26 | -- | 1.32 | -- | 0.283 | 18 | -- | -- | -- | -- |
| 130.08 | 0.534 | 6.68 | 2.23 | 2.27 | -- | -- | -- | 0.288 | 18.1 | -- | -- | -- | -- |
| 257.22 | 0.747 | 6.67 | 2.18 | -- | -1.99 | -- | -- | 0.144 | -- | 60.32 | 397 | -- | -- |
| 233.25 | 0.711 | 6.69 | -- | 2.2 | 1.25 | -- | -- | 0.278 | 18.2 | 86.63 | 1371 | -- | -- |
| 397.26 | 0.931 | 6.64 | 2.16 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 260.95 | 0.756 | 6.74 | -- | 2.24 | -- | -- | -- | 0.0397 | 18.1 | -- | -- | -- | -- |
| 381.16 | 0.909 | 6.7 | -- | -- | -2.3 | -- | -- | -0.0385 | -- | 42 | 400 | -- | -- |
| 520.7 | 1.07 | 6.7 | -- | -- | -- | -- | -- | -0.00321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.39 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 10 | 105.76 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 12 | 106.10 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 14 | 106.13 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 18 | 106.27 | humidity | 70 | 1440 | > th | dose dependent | rect. | 24 | 18 |
| 24 | 106.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 27 | 106.34 | humidity | 70 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 31 | 106.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 32 | 106.36 | humidity | 90 | 720 | > th | dose dependent | sin | 18 | NA |
| 34 | 106.37 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 35 | 106.37 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 61 | 106.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 71 | 106.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 82 | 106.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 99 | 106.65 | humidity | 70 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 118 | 106.70 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 122 | 106.71 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 205 | 106.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 237 | 107.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 238 | 107.00 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 316 | 107.16 | humidity | 70 | 1440 | > th | dose dependent | sin | 23 | NA |
| 457 | 107.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 581 | 107.70 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 604 | 107.74 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 608 | 107.76 | humidity | 60 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 629 | 107.79 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 665 | 107.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 671 | 107.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 679 | 107.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 694 | 107.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 705 | 107.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 731 | 107.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 737 | 108.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 741 | 108.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 753 | 108.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 762 | 108.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 779 | 108.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 789 | 108.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 828 | 108.10 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 846 | 108.12 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 863 | 108.14 | humidity | 60 | 1440 | > th | dose dependent | sin | 17 | NA |
| 890 | 108.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 898 | 108.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 932 | 108.24 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 966 | 108.30 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 974 | 108.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 995 | 108.33 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 1 |