BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0562100 Os02g0562100|Os02g0562100
(290 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57450.1 | chr5:23274008-23274922 REVERSE LENGTH=305 162 3e-40
AT5G20850.1 | chr5:7070758-7072860 REVERSE LENGTH=343 50 1e-06
>AT5G57450.1 | chr5:23274008-23274922 REVERSE LENGTH=305
Length = 304
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 140/284 (49%), Gaps = 39/284 (13%)
Query: 42 KLSLGCPVLDRLLSGGLPPASVTEIAGESASGKTXXXXXXXXXXXXXXX----XXXXXFL 97
KL+ GC +LD L GG+ S+TEI ES GKT +L
Sbjct: 20 KLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYL 79
Query: 98 HSDLPFPLRRLRGLAP---KSRPDLL--------DHVLVAAAHSPSDLISLLSRAQRLLA 146
HS+ PFP RRL L+ +S P + DHV V HS L ++ R +
Sbjct: 80 HSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVG 139
Query: 147 HPGRLPPVRLILVDSIASLFRADFDASPADLKRRSALFFRISAKLKELAHRHRCXXXXXX 206
+ P++LI++DS+A+LFR++FD +P+DLK+RS+LFF+IS KLK+LA +
Sbjct: 140 NSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITN 199
Query: 207 XXXXXXEGEAGNT--------VAWSSGRRVSPALGIAWANCVNTRLFLT----------- 247
E G + +SSGRRV P+LG+AWANCVN+R F++
Sbjct: 200 QVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFISRSDGSIVKDRS 259
Query: 248 -----XXXXXXXXXXXXMKVAFAPHLPERACEFVIRRDGVFGVE 286
+ + F+P+LP +CEF+I R+G+ V+
Sbjct: 260 EKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQ 303
>AT5G20850.1 | chr5:7070758-7072860 REVERSE LENGTH=343
Length = 342
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 21/248 (8%)
Query: 42 KLSLGCPVLDRLLSGGLPPASVTEIAGESASGKTXXXXXXXXX----XXXXXXXXXXXFL 97
+++ G LD++L GG+ S+TE+ GE SGKT ++
Sbjct: 104 QITSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYI 163
Query: 98 HSDLPFPLRRLRGLAPK---SRPDLLDHVLVAAAHSPSDLISLLSRAQRLLAHPGRLPPV 154
++ F +RL +A + + D+L++V A A++ LL A ++
Sbjct: 164 DAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIE----TRF 219
Query: 155 RLILVDSIASLFRADFDASPADLKRRSALFFRISAKLKELAHRHRCXXXXXXXXXXXXEG 214
L++VDS +L+R DF + +L R + L++LA +G
Sbjct: 220 ALLIVDSATALYRTDF-SGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDG 278
Query: 215 EAGNTVAWSSGRRVSPALGIAWANCVNTRLFLTXXXXXXXXXXXXMKVAFAPHLPERACE 274
A +G + P G A+ TRL L KV +P LPE
Sbjct: 279 S-----ALFAGPQFKPIGGNIMAHATTTRLAL----RKGRAEERICKVISSPCLPEAEAR 329
Query: 275 FVIRRDGV 282
F I +GV
Sbjct: 330 FQISTEGV 337
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,471,785
Number of extensions: 134458
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)