BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0562100 Os02g0562100|Os02g0562100
         (290 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0562100  RecA bacterial DNA recombination family protein     392   e-109

>Os02g0562100 RecA bacterial DNA recombination family protein
          Length = 290

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/271 (78%), Positives = 212/271 (78%)

Query: 20  TNSQQXXXXXXXXXXXXXXXAGKLSLGCPVLDRLLSGGLPPASVTEIAGESASGKTXXXX 79
           TNSQQ               AGKLSLGCPVLDRLLSGGLPPASVTEIAGESASGKT    
Sbjct: 20  TNSQQEPRPENPLLLLPSSRAGKLSLGCPVLDRLLSGGLPPASVTEIAGESASGKTQLCL 79

Query: 80  XXXXXXXXXXXXXXXXFLHSDLPFPLRRLRGLAPKSRPDLLDHVLVAAAHSPSDLISLLS 139
                           FLHSDLPFPLRRLRGLAPKSRPDLLDHVLVAAAHSPSDLISLLS
Sbjct: 80  QLALLAPLSPLSASCLFLHSDLPFPLRRLRGLAPKSRPDLLDHVLVAAAHSPSDLISLLS 139

Query: 140 RAQRLLAHPGRLPPVRLILVDSIASLFRADFDASPADLKRRSALFFRISAKLKELAHRHR 199
           RAQRLLAHPGRLPPVRLILVDSIASLFRADFDASPADLKRRSALFFRISAKLKELAHRHR
Sbjct: 140 RAQRLLAHPGRLPPVRLILVDSIASLFRADFDASPADLKRRSALFFRISAKLKELAHRHR 199

Query: 200 CXXXXXXXXXXXXEGEAGNTVAWSSGRRVSPALGIAWANCVNTRLFLTXXXXXXXXXXXX 259
           C            EGEAGNTVAWSSGRRVSPALGIAWANCVNTRLFLT            
Sbjct: 200 CVVVVTNQVVDVVEGEAGNTVAWSSGRRVSPALGIAWANCVNTRLFLTRDADGRGCARRR 259

Query: 260 MKVAFAPHLPERACEFVIRRDGVFGVEPSGR 290
           MKVAFAPHLPERACEFVIRRDGVFGVEPSGR
Sbjct: 260 MKVAFAPHLPERACEFVIRRDGVFGVEPSGR 290



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,841,432
Number of extensions: 258928
Number of successful extensions: 693
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)