Os02g0530300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, A20-type domain containing protein.
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Os02g0530300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, A20-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 285.7 | 0.794 | 6.63 | 3.18 | 1.3 | -3.35 | 1.29 | 4.12 | 0.975 | 5.31 | 21.1 | 97 | -- | -- |
| 297.84 | 0.804 | 6.71 | 2.5 | 1.32 | -3.06 | 0.441 | -- | 0.779 | 5.21 | 21 | 97 | -- | -- |
| 288.88 | 0.792 | 6.66 | 3.11 | 1.33 | -3.32 | -- | 3.62 | 0.942 | 5.08 | 21.29 | 100 | -- | -- |
| 297.1 | 0.803 | 6.73 | 2.45 | 1.34 | -3.03 | -- | -- | 0.735 | 4.9 | 21.09 | 111 | -- | -- |
| 344.09 | 0.864 | 6.58 | 3.73 | -- | -4.42 | -- | 6.12 | 1.25 | -- | 22.76 | 150 | -- | -- |
| 447.08 | 0.991 | 6.83 | 1.79 | 2.47 | -- | 0.517 | -- | 0.234 | 4.28 | -- | -- | -- | -- |
| 447.79 | 0.991 | 6.84 | 1.78 | 2.48 | -- | -- | -- | 0.231 | 4.25 | -- | -- | -- | -- |
| 357.49 | 0.881 | 6.73 | 2.62 | -- | -3.99 | -- | -- | 0.832 | -- | 22.98 | 147 | -- | -- |
| 442.06 | 0.979 | 6.81 | -- | 1.55 | -2.36 | -- | -- | 0.359 | 4.6 | 22.64 | 116 | -- | -- |
| 778.92 | 1.3 | 6.85 | 1.88 | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
| 531.37 | 1.08 | 6.88 | -- | 2.51 | -- | -- | -- | 0.0328 | 4.23 | -- | -- | -- | -- |
| 525.69 | 1.07 | 6.83 | -- | -- | -3.54 | -- | -- | 0.39 | -- | 24.1 | 148 | -- | -- |
| 872.13 | 1.38 | 6.9 | -- | -- | -- | -- | -- | 0.0884 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 276.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 2 | 278.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 10 | 281.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 12 | 282.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 13 | 282.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 59 | 289.40 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 70 | 290.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 80 | 291.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 87 | 291.67 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 99 | 292.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 111 | 293.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 128 | 294.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 150 | 295.74 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 204 | 298.23 | temperature | 15 | 90 | > th | dose dependent | sin | 23 | NA |
| 216 | 298.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 223 | 299.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 282 | 300.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 328 | 302.29 | temperature | 15 | 10 | > th | dose dependent | sin | 21 | NA |
| 333 | 302.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 407 | 304.44 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 419 | 304.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 455 | 305.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 493 | 306.48 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 515 | 307.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 601 | 308.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 604 | 309.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 627 | 309.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 668 | 310.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 696 | 310.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 735 | 311.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 737 | 311.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 749 | 311.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 770 | 311.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 814 | 312.35 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 879 | 313.28 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 890 | 313.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 923 | 313.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 934 | 313.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 984 | 314.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 985 | 314.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |