BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0530300 Os02g0530300|AK063708
(154 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162 118 1e-27
AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169 106 5e-24
AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176 93 5e-20
AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171 91 2e-19
AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164 86 8e-18
AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177 85 1e-17
AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161 82 8e-17
AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126 81 2e-16
AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131 78 1e-15
AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174 67 5e-12
>AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162
Length = 161
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 1 MAEEQRWQ--EGCHRLCANNCGFFGSPATLDLCSKCYRD---RQGREXXXXXXXXXXXXX 55
MAEE R + EG HRLC NNCGFFGS AT++LCS CY D +Q ++
Sbjct: 1 MAEEHRCETPEG-HRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSP 59
Query: 56 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXCRKRVGLTGFACRCG 111
CRKRVGLTGF CRCG
Sbjct: 60 VIAPVLENYAAELEIPTTKKTEEKKPIQIPTEQPSPPQRPNRCTVCRKRVGLTGFMCRCG 119
Query: 112 GTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLK 151
TFCG+HRYPE H C FDFK+AGR+ IA+ANPL+ KL+
Sbjct: 120 TTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQ 159
>AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169
Length = 168
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 13 RLCANNCGFFGSPATLDLCSKCYRDRQGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 72
+LC CGFFGSP+ ++LCSKCYRD + E
Sbjct: 17 KLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEIT 76
Query: 73 X-----------XXXXXXXXXXXXXXXXXXXXXXXCRKRVGLTGFACRCGGTFCGAHRYP 121
C K+VG+TGF CRCG TFCG HRYP
Sbjct: 77 QGVLGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYP 136
Query: 122 ERHACGFDFKAAGRDAIARANPLIKGDKLKDKI 154
E H C FDFK R+AIA+ANP++K DK+ D+I
Sbjct: 137 ESHECQFDFKGVAREAIAKANPVVKADKV-DRI 168
>AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176
Length = 175
Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 97 CRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLK 151
C K+VG+ GF C+CG TFCG+HRYPE+H C FDFK GRDAIA+ANPL+K DK++
Sbjct: 119 CNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQ 173
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 13 RLCANNCGFFGSPATLDLCSKCYRDRQGRE 42
+LC N CGFFGSP+ ++LCSKCYR + E
Sbjct: 17 KLCDNGCGFFGSPSNMNLCSKCYRSLRAEE 46
>AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171
Length = 170
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 45/55 (81%)
Query: 97 CRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLK 151
CRKRVGLTGF CRCG FCG HRYPE H C +DFK+AGR+ IA+ANPL+K KL+
Sbjct: 114 CRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQ 168
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 1 MAEEQRWQEG-CHRLCANNCGFFGSPATLDLCSKCYRD 37
MAEE R Q +RLC NNCGF GS AT++LCS CY D
Sbjct: 1 MAEEHRCQTPESNRLCVNNCGFLGSSATMNLCSNCYGD 38
>AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164
Length = 163
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 44/55 (80%)
Query: 97 CRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLK 151
CR+RVG+TGF CRCG FCG HRY E+H C FDFK G+D IA+ANP++K DKL+
Sbjct: 107 CRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLE 161
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
Query: 1 MAEEQRWQEGCHRLCANNCGFFGSPATLDLCSKCYRDRQGRE 42
MAEE R QE RLCANNCGFFGS AT +LCSKC+RD Q +E
Sbjct: 1 MAEEHRLQEP--RLCANNCGFFGSTATQNLCSKCFRDLQHQE 40
>AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177
Length = 176
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 42/55 (76%)
Query: 97 CRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLK 151
C K+VG+ GF C+CG TFCG HRYPE H C FDFK GR IA+ANP++K DK++
Sbjct: 120 CNKKVGIMGFKCKCGSTFCGEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKIQ 174
>AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161
Length = 160
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 42/54 (77%)
Query: 97 CRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKL 150
CRK+VGLTGF CRCG FC HRY +RH C +D+K AGR+AIAR NP++K K+
Sbjct: 104 CRKKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKM 157
>AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126
Length = 125
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 14 LCANNCGFFGSPATLDLCSKCYRDRQGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 73
LC CGFF + T +LCSKCY D E
Sbjct: 7 LCIRGCGFFSTSQTKNLCSKCYNDFLKDESARYLATFNVNTKAAEEVTAQEATVLGSKGG 66
Query: 74 XXXXXXXXXXXXXXXXXXXXXXXCRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAA 133
C+K+VGL GF CRCG F +HRYPE H+C D+K+A
Sbjct: 67 CA---------------------CKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSA 105
Query: 134 GRDAIARANPLIKGDKL 150
D +A+ NP++KGDKL
Sbjct: 106 AIDVLAKQNPVVKGDKL 122
>AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131
Length = 130
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 43/55 (78%)
Query: 97 CRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLK 151
C+++VG+ GF CRCG FCG+HRYPE H+C FD+K +GR A+A PLI+ DKL+
Sbjct: 74 CKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQ 128
>AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174
Length = 173
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 97 CRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLKDKI 154
C KRVGLTGF CRCG FCG HRY + H C F++ AA ++AIA+ANP++K +KL DKI
Sbjct: 117 CNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAIAKANPVVKAEKL-DKI 173
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Query: 5 QRWQEGCHRLCANNCGFFGSPATLDLCSKCYRD 37
Q EG +LC NNCGFFGS AT+++CSKC++D
Sbjct: 9 QSPPEG-PKLCTNNCGFFGSAATMNMCSKCHKD 40
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.142 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,616,078
Number of extensions: 76221
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 17
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)