Os02g0474700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os02g0474700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.18 | 0.267 | 11.4 | 1.07 | 0.258 | 0.458 | 0.368 | 0.641 | 0.694 | 18.3 | 73.71 | 1390 | -- | -- |
| 32.61 | 0.266 | 11.4 | 1.13 | 0.262 | 0.493 | 0.373 | -- | 0.707 | 18.1 | 74.02 | 1410 | -- | -- |
| 32.49 | 0.265 | 11.4 | 1.07 | 0.264 | 0.452 | -- | 0.64 | 0.698 | 18 | 73.99 | 1413 | -- | -- |
| 32.95 | 0.267 | 11.4 | 1.12 | 0.27 | 0.491 | -- | -- | 0.709 | 17.9 | 74.13 | 1432 | -- | -- |
| 35.91 | 0.279 | 11.4 | 1.06 | -- | 0.5 | -- | 0.64 | 0.696 | -- | 74.1 | 1348 | -- | -- |
| 35.83 | 0.281 | 11.4 | 1.15 | 0.279 | -- | 0.379 | -- | 0.655 | 18 | -- | -- | -- | -- |
| 36.18 | 0.282 | 11.4 | 1.14 | 0.281 | -- | -- | -- | 0.657 | 17.8 | -- | -- | -- | -- |
| 36.36 | 0.281 | 11.4 | 1.12 | -- | 0.523 | -- | -- | 0.707 | -- | 74 | 1333 | -- | -- |
| 65.1 | 0.376 | 11.4 | -- | 0.221 | 0.669 | -- | -- | 0.716 | 17.4 | 82 | 2679 | -- | -- |
| 40.29 | 0.297 | 11.4 | 1.14 | -- | -- | -- | -- | 0.65 | -- | -- | -- | -- | -- |
| 70.73 | 0.393 | 11.5 | -- | 0.264 | -- | -- | -- | 0.529 | 18 | -- | -- | -- | -- |
| 68.16 | 0.385 | 11.4 | -- | -- | 0.636 | -- | -- | 0.695 | -- | 81.63 | 2688 | -- | -- |
| 74.35 | 0.402 | 11.5 | -- | -- | -- | -- | -- | 0.524 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.41 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 30.43 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 3 | 30.53 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 4 | 30.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 5 | 30.56 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 6 | 30.59 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 8 | 30.64 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 9 | 30.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 10 | 30.75 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 11 | 30.79 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 12 | 30.79 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 13 | 30.79 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 17 | 30.82 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 19 | 30.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 21 | 30.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 41 | 31.00 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 48 | 31.04 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 56 | 31.09 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 59 | 31.09 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 64 | 31.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 76 | 31.20 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 80 | 31.21 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 121 | 31.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 149 | 31.40 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 151 | 31.41 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 152 | 31.41 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 189 | 31.45 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 197 | 31.46 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 207 | 31.48 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 229 | 31.50 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 242 | 31.51 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 247 | 31.52 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 298 | 31.58 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 316 | 31.60 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 351 | 31.63 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 365 | 31.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 383 | 31.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 386 | 31.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 430 | 31.71 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 444 | 31.72 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 497 | 31.76 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 7 |
| 567 | 31.81 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 572 | 31.81 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 573 | 31.81 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 615 | 31.84 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 624 | 31.84 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 627 | 31.84 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 655 | 31.85 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 660 | 31.86 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 689 | 31.87 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 695 | 31.87 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 716 | 31.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 734 | 31.89 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 13 |
| 745 | 31.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 752 | 31.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 758 | 31.90 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 794 | 31.93 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 811 | 31.93 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 834 | 31.94 | wind | 1.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 941 | 31.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 942 | 31.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 953 | 31.99 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 955 | 31.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 969 | 32.00 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 981 | 32.00 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 982 | 32.00 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |