BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0474700 Os02g0474700|AK068629
         (675 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0474700  Armadillo-like helical domain containing protein   1256   0.0  
Os04g0337300  Hypothetical protein                                116   4e-26

>Os02g0474700 Armadillo-like helical domain containing protein
          Length = 675

 Score = 1256 bits (3251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/675 (91%), Positives = 616/675 (91%)

Query: 1   MCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRGKSNLQKFIHFIV 60
           MCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRGKSNLQKFIHFIV
Sbjct: 1   MCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRGKSNLQKFIHFIV 60

Query: 61  DIFRRYDEASIEIKPYRQKDGALLAIGTLCDKLKQTDPYKAELERMLVQHVFPEFNSHVG 120
           DIFRRYDEASIEIKPYRQKDGALLAIGTLCDKLKQTDPYKAELERMLVQHVFPEFNSHVG
Sbjct: 61  DIFRRYDEASIEIKPYRQKDGALLAIGTLCDKLKQTDPYKAELERMLVQHVFPEFNSHVG 120

Query: 121 HLRAKAAWVAGQYAHISFSDQDNFRKAMHCIVSGMRDPDLPVRVDSVFALRSFVEACKDL 180
           HLRAKAAWVAGQYAHISFSDQDNFRKAMHCIVSGMRDPDLPVRVDSVFALRSFVEACKDL
Sbjct: 121 HLRAKAAWVAGQYAHISFSDQDNFRKAMHCIVSGMRDPDLPVRVDSVFALRSFVEACKDL 180

Query: 181 NEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCM 240
           NEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCM
Sbjct: 181 NEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCM 240

Query: 241 XXXXXXXXXXXXXXXXXVGCLRAISTILESVSSLPHLFIQIEPTLLPIMRRMLTSDGQDV 300
                            VGCLRAISTILESVSSLPHLFIQIEPTLLPIMRRMLTSDGQDV
Sbjct: 241 ASQEADDEADDSGALAAVGCLRAISTILESVSSLPHLFIQIEPTLLPIMRRMLTSDGQDV 300

Query: 301 YEEVLEIVSYMTFFSPSISLDMWSLWPLMMEALNDWAIDFFENILVPLDNYVSRGSDHFL 360
           YEEVLEIVSYMTFFSPSISLDMWSLWPLMMEALNDWAIDFFENILVPLDNYVSRGSDHFL
Sbjct: 301 YEEVLEIVSYMTFFSPSISLDMWSLWPLMMEALNDWAIDFFENILVPLDNYVSRGSDHFL 360

Query: 361 ACKNPDYQQSLWSALSSIMMDQNMEDSDIEPAPKLIEVVFQNCKGNVDQWVEPYLSLTID 420
           ACKNPDYQQSLWSALSSIMMDQNMEDSDIEPAPKLIEVVFQNCKGNVDQWVEPYLSLTID
Sbjct: 361 ACKNPDYQQSLWSALSSIMMDQNMEDSDIEPAPKLIEVVFQNCKGNVDQWVEPYLSLTID 420

Query: 421 RLRRAHKPYLKCLLVQVIANAFYYNPSLTLATLHKLGAVTEIFNIWFGMLEQVKKSGVRA 480
           RLRRAHKPYLKCLLVQVIANAFYYNPSLTLATLHKLGAVTEIFNIWFGMLEQVKKSGVRA
Sbjct: 421 RLRRAHKPYLKCLLVQVIANAFYYNPSLTLATLHKLGAVTEIFNIWFGMLEQVKKSGVRA 480

Query: 481 NFKREHDKKVCCLGLTSLISLPADHIPGEALNRIFKATLDLLVAYKEQVAESKKQXXXXX 540
           NFKREHDKKVCCLGLTSLISLPADHIPGEALNRIFKATLDLLVAYKEQVAESKKQ     
Sbjct: 481 NFKREHDKKVCCLGLTSLISLPADHIPGEALNRIFKATLDLLVAYKEQVAESKKQDDADG 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXMGLDEEDADEVNSLHLQKLAAEARGFQPAXXXXXXXXX 600
                                 MGLDEEDADEVNSLHLQKLAAEARGFQPA         
Sbjct: 541 DDMDGFDADEDEDDDEVESDKEMGLDEEDADEVNSLHLQKLAAEARGFQPADEYDDSDDD 600

Query: 601 XXXXXXLQSPIDEVDPFILFVETVQGLQASDPIRFQSLMQTLDFRYQALASGIAQHAEER 660
                 LQSPIDEVDPFILFVETVQGLQASDPIRFQSLMQTLDFRYQALASGIAQHAEER
Sbjct: 601 FSDDEELQSPIDEVDPFILFVETVQGLQASDPIRFQSLMQTLDFRYQALASGIAQHAEER 660

Query: 661 RVEIEKEKLEKANAQ 675
           RVEIEKEKLEKANAQ
Sbjct: 661 RVEIEKEKLEKANAQ 675



>Os04g0337300 Hypothetical protein
          Length = 62

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/62 (87%), Positives = 60/62 (96%)

Query: 614 VDPFILFVETVQGLQASDPIRFQSLMQTLDFRYQALASGIAQHAEERRVEIEKEKLEKAN 673
           VDPFI FV+T+QG+QASDP RFQSLMQTLDFRYQALA+G+AQHAEER+VEIEKEKLEKAN
Sbjct: 1   VDPFIFFVDTIQGMQASDPARFQSLMQTLDFRYQALANGLAQHAEERKVEIEKEKLEKAN 60

Query: 674 AQ 675
           AQ
Sbjct: 61  AQ 62



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,851,315
Number of extensions: 750382
Number of successful extensions: 1545
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1543
Number of HSP's successfully gapped: 2
Length of query: 675
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 567
Effective length of database: 11,396,689
Effective search space: 6461922663
Effective search space used: 6461922663
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)