Os02g0469900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AT-rich interaction region domain containing protein.
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Os02g0469900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AT-rich interaction region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.85 | 0.277 | 12.5 | -0.83 | 1.02 | 0.651 | 1.04 | -1.27 | 0.0696 | 2.22 | 35.49 | 131 | -- | -- |
| 36.45 | 0.281 | 12.5 | -0.834 | 1.01 | 0.785 | 0.0957 | -- | 0.0727 | 1.7 | 113.7 | 248 | -- | -- |
| 36.37 | 0.281 | 12.5 | -0.85 | 1.03 | 0.684 | -- | -0.413 | 0.0659 | 2.2 | 39.98 | 134 | -- | -- |
| 36.47 | 0.281 | 12.5 | -0.838 | 0.999 | 0.793 | -- | -- | 0.0742 | 1.63 | 168.6 | 256 | -- | -- |
| 44.66 | 0.311 | 12.6 | -0.914 | -- | 1.32 | -- | -0.407 | 0.0422 | -- | 8.742 | 270 | -- | -- |
| 44.15 | 0.311 | 12.6 | -0.865 | 1.51 | -- | 0.112 | -- | 0.0192 | 1.87 | -- | -- | -- | -- |
| 44.2 | 0.311 | 12.6 | -0.868 | 1.51 | -- | -- | -- | 0.0186 | 1.86 | -- | -- | -- | -- |
| 43.99 | 0.309 | 12.5 | -0.822 | -- | 1.29 | -- | -- | 0.0632 | -- | 7.386 | 269 | -- | -- |
| 54.91 | 0.345 | 12.5 | -- | 0.94 | 0.865 | -- | -- | 0.172 | 1.56 | 202.7 | 258 | -- | -- |
| 181.43 | 0.629 | 12.5 | -0.806 | -- | -- | -- | -- | 0.0531 | -- | -- | -- | -- | -- |
| 64.06 | 0.374 | 12.5 | -- | 1.49 | -- | -- | -- | 0.115 | 1.85 | -- | -- | -- | -- |
| 61.5 | 0.365 | 12.5 | -- | -- | 1.37 | -- | -- | 0.182 | -- | 14.9 | 255 | -- | -- |
| 198.57 | 0.658 | 12.5 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.71 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 5 | 34.43 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 6 | 34.54 | radiation | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 10 | 34.72 | radiation | 40 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 16 | 34.82 | radiation | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 17 | 34.84 | radiation | 40 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 18 | 34.85 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 21 |
| 24 | 34.96 | radiation | 30 | 270 | < th | dose independent | rect. | 4 | 16 |
| 34 | 35.10 | radiation | 20 | 90 | < th | dose independent | rect. | 7 | 16 |
| 44 | 35.18 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 46 | 35.19 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 72 | 35.23 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 82 | 35.29 | radiation | 1 | 90 | > th | dose dependent | sin | 19 | NA |
| 96 | 35.33 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 102 | 35.36 | radiation | 30 | 270 | < th | dose independent | rect. | 10 | 23 |
| 109 | 35.39 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 110 | 35.39 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 150 | 35.55 | radiation | 1 | 270 | > th | dose dependent | sin | 1 | NA |
| 184 | 35.64 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 186 | 35.65 | radiation | 40 | 270 | < th | dose independent | rect. | 14 | 23 |
| 188 | 35.66 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 189 | 35.67 | radiation | 40 | 270 | < th | dose independent | sin | 23 | NA |
| 237 | 35.76 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 307 | 35.79 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 443 | 35.89 | radiation | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 534 | 36.04 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |
| 535 | 36.04 | radiation | 40 | 270 | < th | dose independent | no | NA | NA |
| 539 | 36.04 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 18 |
| 708 | 36.16 | radiation | 40 | 10 | < th | dose dependent | rect. | 18 | 20 |
| 790 | 36.27 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 11 |