BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0469900 Os02g0469900|AK065847
         (467 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0469900  AT-rich interaction region domain containing p...   761   0.0  
Os09g0544500                                                      208   8e-54

>Os02g0469900 AT-rich interaction region domain containing protein
          Length = 467

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/410 (90%), Positives = 369/410 (90%)

Query: 58  RRTLVAYPARVAGYKXXXXXXXXFRRALEGLHAQMGTKLKVPIIGGKDLDLHQLFKEVTS 117
           RRTLVAYPARVAGYK        FRRALEGLHAQMGTKLKVPIIGGKDLDLHQLFKEVTS
Sbjct: 58  RRTLVAYPARVAGYKDVVADAAVFRRALEGLHAQMGTKLKVPIIGGKDLDLHQLFKEVTS 117

Query: 118 RGGIDKVKSDNRWREVTASFIFPATATNASFMLKKYYMSLLYHFERLYLFEAQGWYQETD 177
           RGGIDKVKSDNRWREVTASFIFPATATNASFMLKKYYMSLLYHFERLYLFEAQGWYQETD
Sbjct: 118 RGGIDKVKSDNRWREVTASFIFPATATNASFMLKKYYMSLLYHFERLYLFEAQGWYQETD 177

Query: 178 SRSISCIEMKAEGQASRKRKRGSNSCSSDLAASLDNDVQVIIDGKFEHGYIVTVIMGSKS 237
           SRSISCIEMKAEGQASRKRKRGSNSCSSDLAASLDNDVQVIIDGKFEHGYIVTVIMGSKS
Sbjct: 178 SRSISCIEMKAEGQASRKRKRGSNSCSSDLAASLDNDVQVIIDGKFEHGYIVTVIMGSKS 237

Query: 238 TKAVLYNCTEEPAVPTAVPHVAIDSAEGIXXXXXXXXKKLSTTDPNHPKPNRSGYNFFFQ 297
           TKAVLYNCTEEPAVPTAVPHVAIDSAEGI        KKLSTTDPNHPKPNRSGYNFFFQ
Sbjct: 238 TKAVLYNCTEEPAVPTAVPHVAIDSAEGIRPRRRRRRKKLSTTDPNHPKPNRSGYNFFFQ 297

Query: 298 DQHRKLKPEYPGQDRLISKMIGERWNNLGPEDKAVYQEKGVEDKARYQRQLALYREQRTG 357
           DQHRKLKPEYPGQDRLISKMIGERWNNLGPEDKAVYQEKGVEDKARYQRQLALYREQRTG
Sbjct: 298 DQHRKLKPEYPGQDRLISKMIGERWNNLGPEDKAVYQEKGVEDKARYQRQLALYREQRTG 357

Query: 358 QPISNAVPIQQRLPQKEVTIDEVDSKVSEGDILLSNQGYXXXXXXXXXXXXXGEKNVEDD 417
           QPISNAVPIQQRLPQKEVTIDEVDSKVSEGDILLSNQGY             GEKNVEDD
Sbjct: 358 QPISNAVPIQQRLPQKEVTIDEVDSKVSEGDILLSNQGYSSSTSSSDETADSGEKNVEDD 417

Query: 418 EEFNXXXXXXXXXXXXDSHGQPDPSADGERFELRRRENPKIDEKRDMPPN 467
           EEFN            DSHGQPDPSADGERFELRRRENPKIDEKRDMPPN
Sbjct: 418 EEFNTETSPEPSMETTDSHGQPDPSADGERFELRRRENPKIDEKRDMPPN 467



>Os09g0544500 
          Length = 306

 Score =  208 bits (529), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 168/316 (53%), Gaps = 29/316 (9%)

Query: 62  VAYPARVAGYKXXXXXXXXFRRALEGLHAQMGTKLKVPIIGGKDLDLHQLFKEVTSRGGI 121
           + YP  +  ++        F   L   H+ MGTK  +P+IGGK++DLH L+ EVTSRGG+
Sbjct: 5   LLYPPPLLSHEEVANDRAAFMDTLRRFHSLMGTKFMIPVIGGKEMDLHALYVEVTSRGGL 64

Query: 122 DKVKSDNRWREVTASFIFPATATNASFMLKKYYMSLLYHFERLYLFEAQGWYQETDSRSI 181
            KV  + +WREV A F FPAT T+AS++L++YY+SLL+H+E++Y F A G      + ++
Sbjct: 65  AKVMEERKWREVMARFSFPATTTSASYVLRRYYLSLLHHYEQVYFFRAHGALLRPAASAL 124

Query: 182 SCIEMK----------AEGQASRK----RKRGSNSCSSDLAASLDNDVQVIIDGKFEHGY 227
           +    +          A  +A ++     + G   CS  +  S        IDGKFEHGY
Sbjct: 125 TKTPRRKMRGTSDQSPAAAEAGKRMALPERLGGEPCSFSVTGS--------IDGKFEHGY 176

Query: 228 IVTVIMGSKSTKAVLYNCTEEPAVPTAVPHVAIDSAEGIXXXXXXXXKKLSTTDPNHPKP 287
           +VTV + +++ + VLY     P                         +     DP  P+P
Sbjct: 177 LVTVKIAAETLRGVLYRVAPPPP-------PPAAPPPPPPPARGRRRRGRRQRDPAQPRP 229

Query: 288 NRSGYNFFFQDQHRKLKPEYPGQDRLISKMIGERWNNLGPEDKAVYQEKGVEDKARYQRQ 347
           NRS YNFFF+++H +LK  +P ++R  S+MIG+ WN L  +DK VY     EDK RY+R+
Sbjct: 230 NRSAYNFFFKEKHPELKATHPHREREYSRMIGDAWNRLAADDKMVYYRHSAEDKERYKRE 289

Query: 348 LALYREQRTGQPISNA 363
           +  Y E+    P + A
Sbjct: 290 MQEYNERLKLAPSTMA 305



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,866,530
Number of extensions: 503217
Number of successful extensions: 762
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 2
Length of query: 467
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 363
Effective length of database: 11,605,545
Effective search space: 4212812835
Effective search space used: 4212812835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)