Os02g0329300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0329300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.45 | 0.196 | 12.3 | 0.405 | 0.307 | 0.705 | -0.105 | 0.443 | 0.185 | 4.49 | 11.17 | 636 | -- | -- |
| 17.54 | 0.195 | 12.3 | 0.34 | 0.387 | 0.74 | -0.0358 | -- | 0.165 | 3.87 | 11.48 | 409 | -- | -- |
| 17.46 | 0.195 | 12.3 | 0.406 | 0.352 | 0.721 | -- | 0.436 | 0.184 | 4.18 | 11.2 | 517 | -- | -- |
| 17.54 | 0.195 | 12.3 | 0.335 | 0.389 | 0.75 | -- | -- | 0.163 | 3.84 | 11.6 | 407 | -- | -- |
| 19.45 | 0.205 | 12.3 | 0.37 | -- | 0.668 | -- | 0.317 | 0.186 | -- | 14.8 | 1078 | -- | -- |
| 23.75 | 0.228 | 12.3 | 0.502 | 0.234 | -- | 0.0545 | -- | 0.273 | 1.95 | -- | -- | -- | -- |
| 23.76 | 0.228 | 12.3 | 0.5 | 0.234 | -- | -- | -- | 0.273 | 2.04 | -- | -- | -- | -- |
| 19.51 | 0.206 | 12.3 | 0.311 | -- | 0.669 | -- | -- | 0.162 | -- | 14.77 | 1092 | -- | -- |
| 20.21 | 0.209 | 12.3 | -- | 0.432 | 0.902 | -- | -- | 0.111 | 4.02 | 11.14 | 407 | -- | -- |
| 27.06 | 0.243 | 12.3 | 0.51 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 30.36 | 0.258 | 12.3 | -- | 0.244 | -- | -- | -- | 0.217 | 2.09 | -- | -- | -- | -- |
| 21.38 | 0.215 | 12.3 | -- | -- | 0.715 | -- | -- | 0.105 | -- | 9.028 | 2486 | -- | -- |
| 33.93 | 0.272 | 12.3 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 2 | 17.27 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 4 | 17.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 6 | 17.32 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 8 | 17.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 12 | 17.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 13 | 17.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 15 | 17.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 33 | 17.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 37 | 17.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 39 | 17.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 43 | 17.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 45 | 17.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 63 | 17.48 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 69 | 17.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 71 | 17.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 72 | 17.49 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 109 | 17.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 123 | 17.55 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 132 | 17.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 148 | 17.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 150 | 17.57 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 164 | 17.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 196 | 17.60 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 219 | 17.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 277 | 17.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 282 | 17.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 10 |
| 301 | 17.65 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 340 | 17.66 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 378 | 17.67 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 385 | 17.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 423 | 17.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 779 | 17.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 780 | 17.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |