BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0329300 Os02g0329300|AK100291
         (717 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0329300  Conserved hypothetical protein                     1343   0.0  

>Os02g0329300 Conserved hypothetical protein
          Length = 717

 Score = 1343 bits (3477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/717 (92%), Positives = 664/717 (92%)

Query: 1   MATDREKEREAELESAMYTNCXXXXXXXXXXGSPSSPAAGPRVGLFRHSNPRLGEQLLYF 60
           MATDREKEREAELESAMYTNC          GSPSSPAAGPRVGLFRHSNPRLGEQLLYF
Sbjct: 1   MATDREKEREAELESAMYTNCLLLGLDLAVLGSPSSPAAGPRVGLFRHSNPRLGEQLLYF 60

Query: 61  LLSSLRGPAQSAKDFDKVWPIFDSAQSREFRKIVQGIISELEQQGALPRSNSRVSSLATC 120
           LLSSLRGPAQSAKDFDKVWPIFDSAQSREFRKIVQGIISELEQQGALPRSNSRVSSLATC
Sbjct: 61  LLSSLRGPAQSAKDFDKVWPIFDSAQSREFRKIVQGIISELEQQGALPRSNSRVSSLATC 120

Query: 121 CGPRFVELLWQLSVHALREVHRRTFAADVASSPLPAALTDVSYLHAAALLPVTKARIALE 180
           CGPRFVELLWQLSVHALREVHRRTFAADVASSPLPAALTDVSYLHAAALLPVTKARIALE
Sbjct: 121 CGPRFVELLWQLSVHALREVHRRTFAADVASSPLPAALTDVSYLHAAALLPVTKARIALE 180

Query: 181 RRKFLKNANIAVQRQTTWSNLAHEMTAEFRSLCAEEAYLQQELEKLQDMRNKSKLEGELW 240
           RRKFLKNANIAVQRQTTWSNLAHEMTAEFRSLCAEEAYLQQELEKLQDMRNKSKLEGELW
Sbjct: 181 RRKFLKNANIAVQRQTTWSNLAHEMTAEFRSLCAEEAYLQQELEKLQDMRNKSKLEGELW 240

Query: 241 DERISSSSGQNSHLVSKATRLWETILARKGQHEVLASGPIEDLIAHREHRYRISGSQLLA 300
           DERISSSSGQNSHLVSKATRLWETILARKGQHEVLASGPIEDLIAHREHRYRISGSQLLA
Sbjct: 241 DERISSSSGQNSHLVSKATRLWETILARKGQHEVLASGPIEDLIAHREHRYRISGSQLLA 300

Query: 301 AMDLSSSVPHXXXXXXXXXXXXPFLDKQEQMSALFQGKEEALSRLDDRNGRAQQQTVDVA 360
           AMDLSSSVPH            PFLDKQEQMSALFQGKEEALSRLDDRNGRAQQQTVDVA
Sbjct: 301 AMDLSSSVPHSELLSARASEASPFLDKQEQMSALFQGKEEALSRLDDRNGRAQQQTVDVA 360

Query: 361 EILRRWTHALQRIHKQSLHLAKANDGDGPELLRSASDGETSTHADSLTATLAEHRQHLVS 420
           EILRRWTHALQRIHKQSLHLAKANDGDGPELLRSASDGETSTHADSLTATLAEHRQHLVS
Sbjct: 361 EILRRWTHALQRIHKQSLHLAKANDGDGPELLRSASDGETSTHADSLTATLAEHRQHLVS 420

Query: 421 IQGLINQLKEAIPAMQQSIADLSEEVNSVSSNPMDKIISRLSPSVQNSGFGRAXXXXXXX 480
           IQGLINQLKEAIPAMQQSIADLSEEVNSVSSNPMDKIISRLSPSVQNSGFGRA       
Sbjct: 421 IQGLINQLKEAIPAMQQSIADLSEEVNSVSSNPMDKIISRLSPSVQNSGFGRAEESSSEL 480

Query: 481 XXXXXXXXXXHLDKAGSSPAXXXXXXXXXXXXXXGKGTQAQKRNALGRQPSQEILSEEKT 540
                     HLDKAGSSPA              GKGTQAQKRNALGRQPSQEILSEEKT
Sbjct: 481 SEMTSKLSSTHLDKAGSSPALKLPPLFSLTPSSSGKGTQAQKRNALGRQPSQEILSEEKT 540

Query: 541 LPLPSTKDETNGSIHENEGYFAHNIRRSVREAALSKPLRNPERPHDQSSDDGSEHFFIPL 600
           LPLPSTKDETNGSIHENEGYFAHNIRRSVREAALSKPLRNPERPHDQSSDDGSEHFFIPL
Sbjct: 541 LPLPSTKDETNGSIHENEGYFAHNIRRSVREAALSKPLRNPERPHDQSSDDGSEHFFIPL 600

Query: 601 STGASKMEIDAVDNNRRMQKLGFSSPQMKFSDLHFNVDSPMHATPVLSSKLNGHDDPNTV 660
           STGASKMEIDAVDNNRRMQKLGFSSPQMKFSDLHFNVDSPMHATPVLSSKLNGHDDPNTV
Sbjct: 601 STGASKMEIDAVDNNRRMQKLGFSSPQMKFSDLHFNVDSPMHATPVLSSKLNGHDDPNTV 660

Query: 661 TSMLDPVSGLGHQSFITDDALDQVFSPPLLLETSLFQDAYEDLLAPLSETDTALMEH 717
           TSMLDPVSGLGHQSFITDDALDQVFSPPLLLETSLFQDAYEDLLAPLSETDTALMEH
Sbjct: 661 TSMLDPVSGLGHQSFITDDALDQVFSPPLLLETSLFQDAYEDLLAPLSETDTALMEH 717



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,860,763
Number of extensions: 872986
Number of successful extensions: 1909
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1908
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 609
Effective length of database: 11,396,689
Effective search space: 6940583601
Effective search space used: 6940583601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)