BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0329300 Os02g0329300|AK100291
         (717 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40740.1  | chr5:16302229-16306371 REVERSE LENGTH=742          738   0.0  

>AT5G40740.1 | chr5:16302229-16306371 REVERSE LENGTH=742
          Length = 741

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/755 (56%), Positives = 501/755 (66%), Gaps = 52/755 (6%)

Query: 1   MATDREKEREAELESAMYTNCXXXXXXXXXXGSPSSPAAGPRVGLFRHSNPRLGEQLLYF 60
           M  DREKERE ELESAMYTNC          G  +S    PRVGLFRHSNP+LGEQLLYF
Sbjct: 1   MTMDREKERELELESAMYTNCLLLGLDPNVIGLGASNGT-PRVGLFRHSNPKLGEQLLYF 59

Query: 61  LLSSLRGPAQSAKDFDKVWPIFDSAQSREFRKIVQGIISELEQQGALPRSNSRVSSLATC 120
           +LSSLRGPAQS+KDFDKVWPIFDSAQSR+FRK+VQ IISELE QGALPRSNSRVSSLATC
Sbjct: 60  ILSSLRGPAQSSKDFDKVWPIFDSAQSRDFRKVVQAIISELESQGALPRSNSRVSSLATC 119

Query: 121 CGPRFVELLWQLSVHALREVHRRTFAADVASSPLPAALTDVSYLHAAALLPVTKARIALE 180
           CGPRFVELLWQLS+HALREVHRRTF ADVAS+PLP++LTDVS+ HAA LLPVTKARI LE
Sbjct: 120 CGPRFVELLWQLSLHALREVHRRTFPADVASNPLPSSLTDVSFSHAATLLPVTKARIVLE 179

Query: 181 RRKFLKNANIAVQRQTTWSNLAHEMTAEFRSLCAEEAYLQQELEKLQDMRNKSKLEGELW 240
           RR+FLKNA  AVQRQ  WSNLAHEMTAEFR LCAEEAYLQQELEKL D+RNK K EGE+W
Sbjct: 180 RRRFLKNAETAVQRQAMWSNLAHEMTAEFRGLCAEEAYLQQELEKLNDLRNKVKQEGEVW 239

Query: 241 DERISSSSGQNSHLVSKATRLWETILARKGQHEVLASGPIEDLIAHREHRYRISGSQLLA 300
           D+ +SSSS QNSHLVSKATRLW++I+ARKGQHEVLASGPIEDLIAHREHRYRISGS LLA
Sbjct: 240 DDLVSSSS-QNSHLVSKATRLWDSIMARKGQHEVLASGPIEDLIAHREHRYRISGSALLA 298

Query: 301 AMDLSSSVPHXXXXXXXXXXXXPFLDKQEQMSALF-----------------QGKEEALS 343
           AMD SS VP                D +E     +                 Q  +E LS
Sbjct: 299 AMDQSSQVPRAELLSAHSDDSASLADDKELSDGSYTNMHDHSLVDSFETASSQASDETLS 358

Query: 344 RLDDRNGRAQQQTVDVAEILRRWTHALQRIHKQSLHLAKANDGDGPELLRSASDGETSTH 403
           R+DDR G+   QTVDVAE++RRWTHALQRIHKQSL LAKANDGDGP++LR+ASDG TS H
Sbjct: 359 RVDDRGGKI-NQTVDVAEVIRRWTHALQRIHKQSLLLAKANDGDGPDILRTASDGGTSGH 417

Query: 404 ADSLTATLAEHRQHLVSIQGLINQLKEAIPAMQQSIADLSEEVNSVSSN--PMDKIISRL 461
            +SL ATL EH+QHL S Q LINQLKE  PA+Q+SI++ +E VNS+     P+ +   + 
Sbjct: 418 VESLAATLTEHQQHLASFQVLINQLKEVSPAIQKSISECTEMVNSLPPTLPPVTRSNGQA 477

Query: 462 SPSVQNSGFGRAXXXXXXXXXX-XXXXXXXHLDKAGSSPAXXXXXXXXXXXXXXGKGTQA 520
           S  +Q+ G GR                    L+K  +SP               GKG   
Sbjct: 478 SSLLQSQGSGRIMEGVSNDVAELTSTMSNVQLEKVSASPTLKLPQLFSSTPTSSGKGGNG 537

Query: 521 QKRNALGRQPSQ-EILSEEKTLPLPSTKDETNGSIHENEGYFAHNIRRSVREAALSKPLR 579
           QKR  +  Q ++ E LSE+ +     +    +    +    F HN+++SVREAAL  P  
Sbjct: 538 QKRQTMASQVNKMESLSEKNSTDQALSNARPDNLPTDTSSSFVHNLKKSVREAALLIP-S 596

Query: 580 NPERPHDQSSDDGSEHFFIPLS-TGASKMEIDA----VDNNRRMQKL---GFSSPQM--- 628
           +     D  SD+GSEH+F+PLS TG S+   +     +  +R +  L    F  P +   
Sbjct: 597 SAGSSRDSQSDEGSEHYFVPLSATGFSRFPSETKALPLRGSRALTSLSEPSFLEPNVPDS 656

Query: 629 ----KFSDLHFNVDSPMHATPVLSSKLNGHDDPNTVTSML--DPVSGLGHQSFITDDALD 682
               K+SD+    D        L S    +D+ N   S+   + V+    QSF   D  D
Sbjct: 657 FAPSKYSDIPDTYDD-------LDS-FKDYDNGNGFLSVAGSNSVASDAQQSFYDID--D 706

Query: 683 QVFSPPLLLETSLFQDAYEDLLAPLSETDTALMEH 717
           QVFSPPLL+++SL  DAYEDLLAPLSET+ ALMEH
Sbjct: 707 QVFSPPLLMDSSLLSDAYEDLLAPLSETEAALMEH 741



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,693,146
Number of extensions: 536046
Number of successful extensions: 1301
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1294
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 611
Effective length of database: 8,200,473
Effective search space: 5010489003
Effective search space used: 5010489003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)