Os02g0300700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C).
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Os02g0300700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.28 | 0.313 | 12.3 | -0.307 | 1.23 | 0.443 | 0.388 | -1.8 | -0.0706 | 7.29 | 0.84 | 1436 | -- | -- |
| 46.48 | 0.318 | 12.3 | -0.111 | 1.21 | 0.758 | 0.344 | -- | -0.0575 | 7.24 | 0.4939 | 1450 | -- | -- |
| 44.58 | 0.311 | 12.3 | -0.311 | 1.23 | 0.44 | -- | -1.77 | -0.0699 | 7.34 | 0.8343 | 1412 | -- | -- |
| 46.82 | 0.319 | 12.3 | -0.11 | 1.21 | 0.781 | -- | -- | -0.0574 | 7.28 | 0.4917 | 1438 | -- | -- |
| 120.29 | 0.514 | 12.3 | 0.0868 | -- | 0.352 | -- | 0.0204 | 0.0739 | -- | 1.07 | 1495 | -- | -- |
| 52.56 | 0.34 | 12.3 | 0.0631 | 1.24 | -- | 0.357 | -- | 0.0608 | 7.32 | -- | -- | -- | -- |
| 52.91 | 0.341 | 12.3 | 0.0708 | 1.24 | -- | -- | -- | 0.06 | 7.31 | -- | -- | -- | -- |
| 120.29 | 0.513 | 12.3 | 0.0866 | -- | 0.353 | -- | -- | 0.0738 | -- | 1.07 | 1495 | -- | -- |
| 47.08 | 0.32 | 12.3 | -- | 1.25 | 0.733 | -- | -- | -0.0555 | 7.33 | 0.5 | 1434 | -- | -- |
| 134.21 | 0.541 | 12.3 | 0.092 | -- | -- | -- | -- | 0.0808 | -- | -- | -- | -- | -- |
| 53.04 | 0.341 | 12.3 | -- | 1.24 | -- | -- | -- | 0.0521 | 7.3 | -- | -- | -- | -- |
| 120.49 | 0.513 | 12.3 | -- | -- | 0.353 | -- | -- | 0.0642 | -- | 1.07 | 1495 | -- | -- |
| 134.44 | 0.541 | 12.3 | -- | -- | -- | -- | -- | 0.0706 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 3 | 41.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 4 | 41.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 16 | 43.14 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 17 | 43.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 26 | 43.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 34 | 43.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 39 | 43.39 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 41 | 43.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 66 | 43.43 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 74 | 43.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 78 | 43.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 103 | 43.47 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 131 | 43.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 189 | 43.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 237 | 43.71 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 257 | 43.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 269 | 43.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 382 | 44.04 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 384 | 44.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 415 | 44.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 422 | 44.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 424 | 44.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 433 | 44.21 | humidity | 90 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 482 | 44.36 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 537 | 44.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 606 | 44.40 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 628 | 44.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 668 | 44.49 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 677 | 44.52 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 719 | 44.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 828 | 44.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 874 | 44.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 905 | 45.04 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 933 | 45.16 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 980 | 45.30 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 2 |