Os02g0291000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os02g0291000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 482.9 | 1.03 | 5.65 | -1.97 | 0.923 | 4.9 | 2.46 | -6.65 | -0.173 | 3.58 | 21.91 | 864 | 15.6 | 7.84 |
| 502.13 | 1.04 | 5.5 | -0.59 | 1.14 | 4.24 | 1.72 | -- | 0.278 | 3.91 | 21.63 | 906 | 14.9 | 7.58 |
| 487.19 | 1.03 | 5.56 | -1.44 | 1.15 | 4.64 | -- | -4.01 | 0.0517 | 4.48 | 21.93 | 877 | 15.4 | 6.57 |
| 500.27 | 1.04 | 5.52 | -0.71 | 1.24 | 4.51 | -- | -- | 0.214 | 4.77 | 21.66 | 877 | 15.4 | 6.62 |
| 520.15 | 1.06 | 5.61 | -1.33 | -- | 5.23 | -- | -3.67 | -0.109 | -- | 21.19 | 859 | 15.9 | 6.8 |
| 1001.25 | 1.48 | 5.39 | 0.314 | 3.26 | -- | 2.43 | -- | 0.678 | 2.96 | -- | -- | -- | -- |
| 1021.12 | 1.5 | 5.39 | 0.259 | 3.27 | -- | -- | -- | 0.664 | 2.96 | -- | -- | -- | -- |
| 524.49 | 1.07 | 5.53 | -0.683 | -- | 5.08 | -- | -- | 0.138 | -- | 20.24 | 858 | 15.7 | 7.07 |
| 508.16 | 1.05 | 5.51 | -- | 1.19 | 4.34 | -- | -- | 0.237 | 4.77 | 21.42 | 872 | 15.5 | 6.58 |
| 1634.14 | 1.89 | 5.38 | 0.398 | -- | -- | -- | -- | 0.749 | -- | -- | -- | -- | -- |
| 1022.89 | 1.5 | 5.4 | -- | 3.27 | -- | -- | -- | 0.635 | 2.96 | -- | -- | -- | -- |
| 536.41 | 1.08 | 5.52 | -- | -- | 5.02 | -- | -- | 0.165 | -- | 19.96 | 847 | 15.9 | 7 |
| 1638.33 | 1.89 | 5.39 | -- | -- | -- | -- | -- | 0.704 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 568.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 2 | 570.21 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 7 | 574.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 10 | 575.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 28 | 587.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 46 | 594.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 61 | 597.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 64 | 597.62 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 66 | 597.90 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 68 | 598.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 100 | 604.50 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 101 | 604.60 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 6 |
| 147 | 613.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 169 | 616.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 174 | 616.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 187 | 618.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 192 | 619.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 280 | 626.18 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 282 | 626.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 322 | 629.03 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 17 |
| 351 | 631.20 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 363 | 631.86 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 367 | 632.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 371 | 632.37 | radiation | 30 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 383 | 632.77 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 395 | 633.09 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 427 | 634.81 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 430 | 634.94 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 438 | 635.42 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 16 |
| 439 | 635.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 455 | 635.98 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 465 | 636.48 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 473 | 636.80 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 484 | 637.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 496 | 637.35 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 504 | 637.54 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 519 | 637.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 22 |
| 587 | 639.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 592 | 639.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 648 | 639.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 669 | 640.10 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 699 | 640.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 738 | 640.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 758 | 641.25 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 781 | 641.56 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 838 | 642.27 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |