BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0291000 Os02g0291000|009-095-H04
(65 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G24270.1 | chr5:8238781-8240179 REVERSE LENGTH=223 61 1e-10
AT5G47100.1 | chr5:19129896-19131727 REVERSE LENGTH=214 61 1e-10
AT4G17615.1 | chr4:9817142-9818995 FORWARD LENGTH=214 61 1e-10
AT1G64480.1 | chr1:23948028-23949751 REVERSE LENGTH=215 56 4e-09
AT4G26570.2 | chr4:13408608-13409998 REVERSE LENGTH=231 52 6e-08
AT5G55990.1 | chr5:22672189-22673579 FORWARD LENGTH=227 50 2e-07
AT4G26560.1 | chr4:13406733-13407973 REVERSE LENGTH=215 49 6e-07
AT4G33000.1 | chr4:15924349-15926398 FORWARD LENGTH=257 48 9e-07
AT4G01420.1 | chr4:580038-581518 REVERSE LENGTH=204 48 1e-06
AT4G16350.1 | chr4:9242505-9243669 REVERSE LENGTH=227 48 1e-06
>AT5G24270.1 | chr5:8238781-8240179 REVERSE LENGTH=223
Length = 222
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 13 QIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEKI 48
+IFD+FD+KRNGVI+FGEFVRSL +FHP P+ EK+
Sbjct: 78 RIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKV 113
>AT5G47100.1 | chr5:19129896-19131727 REVERSE LENGTH=214
Length = 213
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%)
Query: 4 RLTESSHFKQIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEK 47
R E+ +IFDLFD+KR GVIDFG+FVRSLN+FHP L EK
Sbjct: 65 RKKENLFANRIFDLFDVKRKGVIDFGDFVRSLNVFHPNASLEEK 108
>AT4G17615.1 | chr4:9817142-9818995 FORWARD LENGTH=214
Length = 213
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 4 RLTESSHFKQIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEKI 48
R E+ +IFD+FD+KR GVIDFG+FVRSLN+FHP L +KI
Sbjct: 65 RKRENIFANRIFDMFDVKRKGVIDFGDFVRSLNVFHPNASLEDKI 109
>AT1G64480.1 | chr1:23948028-23949751 REVERSE LENGTH=215
Length = 214
Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 13 QIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEKIA 49
++F +FD KRNGVI+FGEFVRSL+IFHP TP EK A
Sbjct: 78 RVFYMFDRKRNGVIEFGEFVRSLSIFHPYTPEHEKSA 114
>AT4G26570.2 | chr4:13408608-13409998 REVERSE LENGTH=231
Length = 230
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 3 ERLTESSHFKQIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEKI 48
E L + Q+FDLFD K NG++ F EF R+L++FHP P+ +KI
Sbjct: 83 ESLFADRYQSQVFDLFDTKHNGILGFEEFARALSVFHPNAPIEDKI 128
>AT5G55990.1 | chr5:22672189-22673579 FORWARD LENGTH=227
Length = 226
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 7 ESSHFKQIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEKI 48
ES ++FDLFD K NG++ F EF R+L++FHP P+ +KI
Sbjct: 83 ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKI 124
>AT4G26560.1 | chr4:13406733-13407973 REVERSE LENGTH=215
Length = 214
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 7 ESSHFKQIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEKI 48
ES +++FDLFD +G++ F EF R+L++FHP P+ +KI
Sbjct: 71 ESLFSERVFDLFDTNHDGLLGFEEFARALSVFHPSAPIDDKI 112
>AT4G33000.1 | chr4:15924349-15926398 FORWARD LENGTH=257
Length = 256
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 7 ESSHFKQIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEK 47
E+ ++FDLFD K+NGVI+F EF+ +L++FHP + EK
Sbjct: 114 ENLFLDRVFDLFDEKKNGVIEFEEFIHALSVFHPYASIQEK 154
>AT4G01420.1 | chr4:580038-581518 REVERSE LENGTH=204
Length = 203
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 12 KQIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEK 47
++IF LFD++ +G IDFGEFV +LNIFHP + +K
Sbjct: 72 ERIFGLFDMRNDGAIDFGEFVHTLNIFHPNSSPRDK 107
>AT4G16350.1 | chr4:9242505-9243669 REVERSE LENGTH=227
Length = 226
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 6 TESSHFKQIFDLFDLKRNGVIDFGEFVRSLNIFHPETPLAEKI 48
T S ++FDLFD K G++DF F RSL++FHP +KI
Sbjct: 76 TRSLFADRVFDLFDTKNTGILDFEAFARSLSVFHPNAKFEDKI 118
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.142 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,480,253
Number of extensions: 47666
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 10
Length of query: 65
Length of database: 11,106,569
Length adjustment: 38
Effective length of query: 27
Effective length of database: 10,064,761
Effective search space: 271748547
Effective search space used: 271748547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)