Os02g0280500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glyoxalase I.
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Os02g0280500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glyoxalase I.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.97 | 0.472 | 11.9 | -1.49 | 0.121 | 1.66 | -0.158 | 0.345 | -0.8 | 17.7 | 20.92 | 9 | -- | -- |
| 100.97 | 0.468 | 12 | -1.55 | 0.12 | 1.68 | -0.11 | -- | -0.815 | 17.9 | 21 | 7 | -- | -- |
| 100.92 | 0.468 | 11.9 | -1.5 | 0.125 | 1.65 | -- | 0.294 | -0.799 | 17.3 | 21 | 7 | -- | -- |
| 101 | 0.468 | 12 | -1.54 | 0.123 | 1.67 | -- | -- | -0.815 | 17.5 | 21 | 7 | -- | -- |
| 101.59 | 0.469 | 11.9 | -1.52 | -- | 1.72 | -- | 0.295 | -0.814 | -- | 21 | 7 | -- | -- |
| 142.47 | 0.56 | 11.9 | -1.21 | 0.72 | -- | 0.523 | -- | -0.537 | 14.9 | -- | -- | -- | -- |
| 143.39 | 0.561 | 11.9 | -1.2 | 0.722 | -- | -- | -- | -0.534 | 14.9 | -- | -- | -- | -- |
| 101.65 | 0.47 | 12 | -1.56 | -- | 1.74 | -- | -- | -0.829 | -- | 21 | 7 | -- | -- |
| 159.34 | 0.591 | 11.9 | -- | 0.317 | 1.16 | -- | -- | -0.56 | 15.5 | 21.9 | 5 | -- | -- |
| 173.44 | 0.615 | 11.9 | -1.23 | -- | -- | -- | -- | -0.552 | -- | -- | -- | -- | -- |
| 181.44 | 0.63 | 11.9 | -- | 0.746 | -- | -- | -- | -0.4 | 14.9 | -- | -- | -- | -- |
| 162.5 | 0.594 | 11.9 | -- | -- | 1.41 | -- | -- | -0.579 | -- | 23.1 | 4 | -- | -- |
| 213.49 | 0.682 | 11.9 | -- | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 18 |
| 5 | 100.49 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 7 | 100.57 | temperature | 20.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 11 | 100.85 | temperature | 10.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 31 | 101.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 34 | 101.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 41 | 101.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 45 | 101.77 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 47 | 101.78 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 60 | 101.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 62 | 101.90 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 78 | 102.11 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 151 | 102.88 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 161 | 103.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 183 | 103.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 200 | 103.40 | temperature | 30.0 | 30 | < th | dose dependent | sin | 2 | NA |
| 233 | 103.82 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 246 | 103.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 247 | 103.85 | radiation | 1.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 259 | 103.86 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 280 | 103.96 | radiation | 1.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 283 | 103.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 285 | 103.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 366 | 104.42 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 406 | 104.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 408 | 104.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 468 | 104.70 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 488 | 104.88 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 507 | 105.05 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 521 | 105.13 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 535 | 105.20 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 540 | 105.22 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 555 | 105.27 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 597 | 105.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 603 | 105.47 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 605 | 105.48 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 610 | 105.49 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 622 | 105.51 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 625 | 105.51 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 646 | 105.57 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 647 | 105.57 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 655 | 105.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 664 | 105.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 666 | 105.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 667 | 105.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 675 | 105.77 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 681 | 105.81 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 699 | 105.92 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 714 | 106.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 727 | 106.12 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 728 | 106.12 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 740 | 106.19 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 771 | 106.33 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 778 | 106.35 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 854 | 106.68 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 855 | 106.69 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 863 | 106.75 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 880 | 106.85 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 890 | 106.90 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 914 | 106.97 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 923 | 107.02 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 16 |