BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0280500 Os02g0280500|AK058486
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67280.1  | chr1:25188563-25190547 REVERSE LENGTH=351          154   9e-39
AT1G11840.6  | chr1:3995928-3997518 FORWARD LENGTH=323            127   1e-30

>AT1G67280.1 | chr1:25188563-25190547 REVERSE LENGTH=351
          Length = 350

 Score =  154 bits (389), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 72/81 (88%), Positives = 77/81 (95%)

Query: 2   VLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEVVKLFGGQVVREPGPLPGINTKITSI 61
           VLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAE +KLFGG++ REPGPLPGI+TKIT+ 
Sbjct: 270 VLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKITREPGPLPGISTKITAC 329

Query: 62  LDPDGWKSVFVDNIDFAKELE 82
           LDPDGWKSVFVDNIDF KELE
Sbjct: 330 LDPDGWKSVFVDNIDFLKELE 350




 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 45/67 (67%)

Query: 2   VLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEVVKLFGGQVVREPGPLPGINTKITSI 61
           V+ELTYNYGV +YD G  +    I  DDV KT E+VK  GG+V REPGP+ G  T I  I
Sbjct: 140 VIELTYNYGVDKYDIGAGFGHFGIAVDDVAKTVELVKAKGGKVSREPGPVKGGKTVIAFI 199

Query: 62  LDPDGWK 68
            DPDG+K
Sbjct: 200 EDPDGYK 206



>AT1G11840.6 | chr1:3995928-3997518 FORWARD LENGTH=323
          Length = 322

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 69/85 (81%), Gaps = 4/85 (4%)

Query: 2   VLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEVVKL----FGGQVVREPGPLPGINTK 57
           VLELTYNY VTEY KGNAYAQIAIGTDDVYK+ EV+K+     GG++ RE GPLPG+ TK
Sbjct: 238 VLELTYNYDVTEYTKGNAYAQIAIGTDDVYKSGEVIKIVNQELGGKITREAGPLPGLGTK 297

Query: 58  ITSILDPDGWKSVFVDNIDFAKELE 82
           I S LDPDGWK+V VDN DF KELE
Sbjct: 298 IVSFLDPDGWKTVLVDNKDFLKELE 322




 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 42/66 (63%)

Query: 2   VLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEVVKLFGGQVVREPGPLPGINTKITSI 61
           V+ELTYNYGV+ YD G  +   AI T DV K  E V+  GG V REPGP+ G  + I  +
Sbjct: 108 VVELTYNYGVSSYDIGTGFGHFAISTQDVSKLVENVRAKGGNVTREPGPVKGGGSVIAFV 167

Query: 62  LDPDGW 67
            DPDG+
Sbjct: 168 KDPDGY 173



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,837,226
Number of extensions: 64011
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 4
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)