Os02g0272600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aph-1 family protein.
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Os02g0272600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aph-1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.29 | 0.178 | 10.4 | 0.0976 | 0.267 | -0.392 | -0.224 | 0.0891 | 0.0871 | 2.17 | 24.99 | 1428 | -- | -- |
| 14.3 | 0.176 | 10.4 | 0.0831 | 0.265 | -0.393 | -0.2 | -- | 0.0857 | 2.16 | 24.9 | 1423 | -- | -- |
| 14.46 | 0.177 | 10.4 | 0.0999 | 0.266 | -0.396 | -- | 0.0699 | 0.0871 | 1.97 | 25 | 1416 | -- | -- |
| 14.46 | 0.177 | 10.4 | 0.0817 | 0.27 | -0.391 | -- | -- | 0.0817 | 1.97 | 25 | 1411 | -- | -- |
| 18.14 | 0.198 | 10.4 | 0.117 | -- | -0.403 | -- | 0.135 | 0.0976 | -- | 24.6 | 1606 | -- | -- |
| 20.46 | 0.212 | 10.4 | -0.065 | 0.23 | -- | -0.296 | -- | 0.0314 | 2.29 | -- | -- | -- | -- |
| 20.76 | 0.213 | 10.4 | -0.0565 | 0.229 | -- | -- | -- | 0.0334 | 1.93 | -- | -- | -- | -- |
| 18.1 | 0.198 | 10.3 | 0.0953 | -- | -0.407 | -- | -- | 0.114 | -- | 23.4 | 1625 | -- | -- |
| 14.63 | 0.178 | 10.4 | -- | 0.264 | -0.38 | -- | -- | 0.081 | 1.97 | 25.12 | 1411 | -- | -- |
| 23.91 | 0.228 | 10.4 | -0.0471 | -- | -- | -- | -- | 0.0387 | -- | -- | -- | -- | -- |
| 20.85 | 0.214 | 10.4 | -- | 0.227 | -- | -- | -- | 0.0397 | 1.92 | -- | -- | -- | -- |
| 18.32 | 0.199 | 10.4 | -- | -- | -0.384 | -- | -- | 0.101 | -- | 23.5 | 1624 | -- | -- |
| 23.97 | 0.229 | 10.4 | -- | -- | -- | -- | -- | 0.0439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.64 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 13.65 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 13.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 4 | 13.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 38 | 13.86 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 61 | 13.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 68 | 13.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 85 | 14.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 91 | 14.06 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 94 | 14.07 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 102 | 14.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 106 | 14.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 174 | 14.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 175 | 14.17 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 182 | 14.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 185 | 14.18 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 190 | 14.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 202 | 14.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 203 | 14.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 229 | 14.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 230 | 14.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 239 | 14.21 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 242 | 14.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 244 | 14.22 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 252 | 14.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 259 | 14.23 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 280 | 14.23 | temperature | 25 | 1440 | > th | dose dependent | sin | 3 | NA |
| 282 | 14.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 298 | 14.24 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 332 | 14.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 337 | 14.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 338 | 14.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 9 |
| 461 | 14.29 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 470 | 14.29 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 504 | 14.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 572 | 14.33 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 716 | 14.41 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 774 | 14.44 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 796 | 14.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 817 | 14.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 818 | 14.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 821 | 14.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 841 | 14.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 885 | 14.48 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 890 | 14.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 898 | 14.49 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 918 | 14.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 932 | 14.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 21 |