BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0272600 Os02g0272600|AK060159
         (249 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0272600  Aph-1 family protein                                398   e-111

>Os02g0272600 Aph-1 family protein
          Length = 249

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/249 (81%), Positives = 202/249 (81%)

Query: 1   MTVXXXXXXXXXXXXXXFSLFAGVVARKPFXXXXXXXXXXXXXXXXXXXXGIWRVFLPIR 60
           MTV              FSLFAGVVARKPF                    GIWRVFLPIR
Sbjct: 1   MTVAAGLGYALVALGPAFSLFAGVVARKPFLVLTLLTSTLFWLISLIILSGIWRVFLPIR 60

Query: 61  SGAWWPYAILILTSVAFQEGIRLVFWRLYKKMEEMLDSFADRISKPRLCLTDKMLISXXX 120
           SGAWWPYAILILTSVAFQEGIRLVFWRLYKKMEEMLDSFADRISKPRLCLTDKMLIS   
Sbjct: 61  SGAWWPYAILILTSVAFQEGIRLVFWRLYKKMEEMLDSFADRISKPRLCLTDKMLISLAG 120

Query: 121 XXXXXXXXXXFFCLSLLTPAFGRATFYVEKCSRMPFFLVSAIISLGFLVIHTFSMIIAFN 180
                     FFCLSLLTPAFGRATFYVEKCSRMPFFLVSAIISLGFLVIHTFSMIIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGRATFYVEKCSRMPFFLVSAIISLGFLVIHTFSMIIAFN 180

Query: 181 GYDERKRSDQVFVPVVHLIASVMTLINLAPGGCVIGTPLLCVMGAVTLQYCWQMVWRRLS 240
           GYDERKRSDQVFVPVVHLIASVMTLINLAPGGCVIGTPLLCVMGAVTLQYCWQMVWRRLS
Sbjct: 181 GYDERKRSDQVFVPVVHLIASVMTLINLAPGGCVIGTPLLCVMGAVTLQYCWQMVWRRLS 240

Query: 241 EQQHRQFSS 249
           EQQHRQFSS
Sbjct: 241 EQQHRQFSS 249



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.333    0.143    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,344,188
Number of extensions: 210399
Number of successful extensions: 574
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,918,829
Effective search space: 1799743179
Effective search space used: 1799743179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 155 (64.3 bits)