BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0272600 Os02g0272600|AK060159
         (249 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31440.1  | chr2:13399309-13400971 REVERSE LENGTH=251          265   2e-71

>AT2G31440.1 | chr2:13399309-13400971 REVERSE LENGTH=251
          Length = 250

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/249 (49%), Positives = 169/249 (67%)

Query: 1   MTVXXXXXXXXXXXXXXFSLFAGVVARKPFXXXXXXXXXXXXXXXXXXXXGIWRVFLPIR 60
           MTV               SLF  V++RKPF                    G+WR FLP++
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  SGAWWPYAILILTSVAFQEGIRLVFWRLYKKMEEMLDSFADRISKPRLCLTDKMLISXXX 120
           +  WWPYA+L++TSV FQEG+R +FW++YK++E++LDSFADRIS+PRL LTDK+ I+   
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 XXXXXXXXXXFFCLSLLTPAFGRATFYVEKCSRMPFFLVSAIISLGFLVIHTFSMIIAFN 180
                     FFCLSLLTPAFG ATFYVE+CS++PFFL+SAII+L F+ IHTFSM+IAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYDERKRSDQVFVPVVHLIASVMTLINLAPGGCVIGTPLLCVMGAVTLQYCWQMVWRRLS 240
           GY +  + DQ+ VPV+HL A ++TL+N A  GCVIG PLL ++ ++TL +C +MVW+RL 
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLL 240

Query: 241 EQQHRQFSS 249
           E +++  +S
Sbjct: 241 ESRNQSSAS 249



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.333    0.143    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,107,136
Number of extensions: 139976
Number of successful extensions: 508
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 110 (47.0 bits)