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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0258200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : High mobility group box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.24 (0.0935) R2 : 0.367
β1 : -4.88 (0.621) R2dD : 0.778 R2D : -0.961
β2 : 1.59 (0.15) R2dC : 0.174 R2C : 0.00877
β3 : 4.72 (0.406) R2dE : 0.643 R2E : -0.335
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -24.6 (3.01) R2dD*E : 0.908 R2D*E : -0.819
γ1 : -0.517 (0.176) R2dN8 : 0.033 R2N8 : -0.173
σ : 1.09
deviance : 542.82
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_____
C
peak time of C : 19.4
E
wheather : temperature
threshold : 24.75
memory length : 4409
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.85
open length of G : 1.64

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
539.52 1.09 6.22 -4.87 1.63 4.56 1.55 -24 -0.511 19.6 24.9 4395 7.85 1.98
633.83 1.17 5.83 -1.24 1.79 3.84 -0.972 -- -0.19 19.3 12.66 5881 7.1 0.87
542.82 1.09 6.24 -4.88 1.59 4.72 -- -24.6 -0.517 19.4 24.75 4409 7.85 1.64
606.56 1.15 5.79 -0.898 1.6 2.9 -- -- -0.172 19.6 11.85 5833 7.78 0.917
689.35 1.22 6.25 -5.08 -- 4.39 -- -24.1 -0.602 -- 24.7 4391 7.9 1.78
697.48 1.24 5.61 0.377 1.53 -- 1.95 -- 0.568 19.7 -- -- -- --
707.74 1.25 5.61 0.332 1.54 -- -- -- 0.572 19.5 -- -- -- --
702.58 1.23 5.7 -0.906 -- 2.81 -- -- -0.0963 -- 8.626 6732 8.13 0.996
616.37 1.16 5.69 -- 1.62 2.63 -- -- 0.177 19.2 5.148 5828 7.93 0.167
833.9 1.35 5.57 0.308 -- -- -- -- 0.548 -- -- -- -- --
710.65 1.25 5.61 -- 1.53 -- -- -- 0.535 19.5 -- -- -- --
714.19 1.24 5.7 -- -- 2.27 -- -- 0.103 -- 3.471 6724 8.92 0.05
836.41 1.35 5.58 -- -- -- -- -- 0.514 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 558.98 temperature 25 4320 > th dose dependent rect. 9 1
2 562.89 temperature 25 4320 > th dose dependent rect. 7 3
4 563.89 humidity 90 43200 < th dose independent rect. 11 18
7 564.44 humidity 90 43200 < th dose independent rect. 12 16
9 564.52 humidity 90 43200 < th dose independent rect. 21 1
11 565.05 temperature 30 14400 > th dose independent rect. 16 1
16 565.63 humidity 90 43200 > th dose independent rect. 21 1
20 565.76 temperature 30 14400 < th dose independent rect. 16 2
24 566.25 temperature 30 14400 < th dose independent rect. 15 14
46 566.35 temperature 30 14400 < th dose independent rect. 15 4
48 566.39 temperature 30 14400 < th dose independent rect. 15 8
54 566.47 humidity 90 43200 > th dose independent rect. 12 15
55 566.48 temperature 30 14400 > th dose independent sin 14 NA
57 566.55 humidity 90 43200 > th dose independent rect. 11 18
58 566.56 temperature 30 14400 < th dose independent sin 14 NA
97 566.91 temperature 25 4320 < th dose independent rect. 7 3
122 567.26 temperature 30 14400 > th dose independent rect. 12 7
140 567.46 humidity 90 43200 < th dose independent sin 15 NA
141 567.47 temperature 30 14400 > th dose independent rect. 12 1
158 567.68 temperature 30 14400 < th dose independent rect. 12 1
161 567.68 temperature 30 14400 < th dose independent rect. 12 17
168 567.71 humidity 90 43200 > th dose dependent rect. 21 3
170 567.73 temperature 25 4320 > th dose independent rect. 7 3
171 567.73 temperature 30 14400 < th dose independent rect. 12 7
173 567.75 temperature 30 14400 < th dose independent rect. 12 11
266 568.11 humidity 90 43200 > th dose dependent rect. 14 11
281 568.34 humidity 90 43200 > th dose independent sin 16 NA
393 569.15 temperature 25 43200 < th dose independent rect. 7 1
411 569.26 humidity 90 43200 > th dose dependent rect. 17 8
412 569.27 temperature 25 43200 > th dose independent rect. 7 1
642 569.90 temperature 30 43200 > th dose independent no NA NA
671 569.90 temperature 30 43200 < th dose independent rect. 2 17
713 569.90 temperature 30 43200 < th dose independent rect. 2 21
715 569.90 temperature 30 43200 < th dose independent rect. 22 21
749 569.91 temperature 30 43200 < th dose independent no NA NA
763 569.91 temperature 30 43200 < th dose independent rect. 4 23
848 569.99 temperature 25 14400 > th dose independent rect. 23 1
894 570.11 humidity 80 43200 > th dose dependent rect. 8 20
947 570.27 temperature 25 43200 < th dose independent rect. 4 5
969 570.33 temperature 25 43200 > th dose independent rect. 4 5